Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PA2G4P1
Plot displaying the genomic locations of a retrocopy (in chr1a) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr1a:44641797-44644104  UCSC
Strand -
Parental Sequence XM_030822461.1
Parental seq. overlap 2088 bp
Parental seq. overlap (%) 85.9%
Genomic Region Intragenic (SEMA4D)
Retrocopy Summary PA2G4P1, located on chr1a:44641797-44644104, is a retrocopy of the parental gene PA2G4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PA2G4
Full Name N/A
Also known as PA2G4
Coordinate chr11:55181962-55191225
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PA2G4P6
Chimpanzee Pan troglodytes PA2G4P3
Bonobo Pan paniscus PA2G4P3
Gorilla Gorilla gorilla PA2G4P3
Orangutan Pongo abelii PA2G4P4
Green monkey Chlorocebus sabaeus PA2G4P2
Crab-eating macaque Macaca fascicularis PA2G4P3
Rhesus Macaca mulatta PA2G4P3
Baboon Papio anubis PA2G4P2
Golden snub-nosed monkey Rhinopithecus roxellana PA2G4P3
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PA2G4P1
GCTTTCGCTCATCCTCTCCTCGAGGATCAAGGGAGCTCTGACCACAGACTGTGACTGGGAAGGGAGGCAGAGCGGCAGCTCAGGGGAAACGAGGCTGCAGTGGTGGTGGTAGGAAGATGTCAGGCAAAGACGAGCAGCAGGAGCAAACTATCGCCGAGGACCTGGTCGTGACCAAGTATAAGATGGGGCGCGACATTGCCAACGGGATACTTCGGTCCTTGGTGGACGCATCTAGCTCAGGTGTGTCAGTACTGAGCCTGTGTGAGAAAGGTGATGCCATGATTATGCAAGAAACTGGGAAAatcttcaagaaagaaaaagagatgaagagagGTATTGCTTTTCCCACCAGCATTTCGGTAAATAACTGTGTATGTCACTTCTCCCCTTTGAAGAGAGACCAGGATTACATTCTCAAGGAAGGTGACTTGGTAAAAATTGACCTTGGGGTCCATGTGGATGGCTTCATCACTAATGTAGCTCATACTTTTGTGGCTGATGTAGCTCAGGAGACCCAGGTAACAGGAAGGAAAGCAGATGTTATTAAGGCAGCTCACCTTTGTGCTGAAGCTGCCCTACGCCTGGTCACACCTGGAAATCAGAACACACAAGTGACAGAAGCCTGGAACAAAGTTGCCCACTCATTTAACTGCACGCCAATAGATGGTATGCCTGTCACACCAGCTGAAGCAGCATGTCATCGATGGAGAAAAAACCATTACCCAGAATCCCACAGACCAGCAGAAGAAGGACCATGAAAAAGCTGAATTTGAGGTACATGAAGTATATGCTGTGGATGTTCTCGTCAGCTTAGGAGAGGGCAAGGCCAAGGATGCAGGAGAGAGAACCACTATTTACAAACGAGACCCCTCCAAACAGTATGGACTGAAAATGAAAACTTGACGTGCCTTCCTCAGTGAGATGAAAAGATGTTTTGATGCCATGCCGTTTACTTTAAGAGCATGAGAAGATGAGAAGAAGGCTCAGAtgggtgtggtggagtgtgccAAACATGAACTGCTGCAACCATTTAATGTTCTCTATGAGAAGGAGGGTGAATTTGTTGCCCAGTTTAAATTTACAGTTCTGCTCATGCCCAGTGGCCCCATGTGGATAACCAGTGGTCCCTTCCAGCCTGACCTCTATAAATCTGAGATGGAGGTCCAGGATGCAGAGGTAAAGACCCTCCTCCAGAGTTCTGCAAGTTgaaaaacccagaaaaagaaaaaaaaagaaggccttcAAGACTGCAGAGAATGCCACCAATGGGGAAacattagaagaaaatgaagctgGGGACCAAGGTGGGTCCCATCTCCCCAGCTTGCTGCTCCTGCCTCATCCCCTTCCCACCACACCCCAGACTCTGTGAAGTGCAGTTCTTCTCCACCTAGGGCTGCCAGCAGAGTGGGGgtgtccctgcccccaccccagtttTGCAACCCTTCCAACAACAACCAGCTCCATCTGACTCTGGTCTTGGGAGGCGAGGCTTCCCAACCACACAAgactttaaatgaacaaaagaaattaaataataaaatcaggagTCAAAATTCATCATCTTCAAGCCCCTCTTTCTAGCCTTTTCTTTTACTCTCTGCTTGGGTCAAGGCATGTAACCCTACAATACAACAGAGCTAAATTAGCGACCACCGCTGAAACTCAGCCGAATTTTTTTATACCATTCTGATGTTAGCATTTTTCATCTGTTTGgggctttttcctcttttttccattCTCCTCAAGTATTTTATCTGGCTTCAAAATTAGGAggattatttttcagattgttttttaTTCGATGTGGCCGACTCCTCATCTGATTCAGGCTGTCAGTCAGACCCCTCCCATTTTAGGAGCTGGAGCCTTCACTTATGAAGCGATTCCCATCTATGAAAAGGATCCTCATTTGtcaatcttttttcttccattttcacaaagctataaagaaataatCCATCTCAACCTCACCCTTTTCTCTGGAGTCAATGCAGTCTTCCCTCGCTCCATCTTACACAAACCTGAGCTGGAAGCTCGACTGGTTTTGTTCcctgtttgaaatattgtgatCTCCCTCCCTTGAAAGAAAAACCAAGAACCAGAGGAGTAGactgactgaaaataaaaatcctgGCTTTCTGAAGCTATGGACTTGGATTGGATTGCTGGGGCTTTGTAGAGAAAGGTGACAAATTTCAGTACCTCTGGCATGCTGTTCCAGGAAACTAGGGCTCCCACTAACTTATGAGGTTTTTAAACACATTGAAAATGAcatgacattaaaataaatttggatttgctcatt
>XM_030822461.1
GCGGTGGAGAGGACTAGTTGTCCCAGCGTGCCCTGCGCCTCAGCCCGCGCGCTCGCAGCTTCTCGCTCTCGCCTGCCGGCCCGCTCCCTTGCTTGCTCGCGCTTTCGCTCGCCCTCTCCTCGAGGATCGAGGGGACTCTGACCACAGCCTGTGGCTGGGAAGGGAGACAGAGGCGGCGGCGGCTCAGGGGAAACGAGGCTGCAGTGGTGGTAGTAGGAAGATGTCGGGCGAGGACGAGCAGCAGGAGCAAACTATCGCTGAGGACCTGGTCGTGACCAAGTATAAGATGGGGGGCGACATCGCCAACAGGGTACTTCGGTCCTTGGTGGAAGCATCTAGCTCAGGTGTGTCGGTACTGAGCCTGTGTGAGAAAGGTGATGCCATGATTATGGAAGAAACAGGGAAAAtcttcaagaaagaaaaggaaatgaagaaagGTATTGCTTTTCCCACCAGCATTTCGGTAAATAACTGTGTATGTCACTTCTCCCCTTTGAAGAGCGACCAGGATTATATTCTCAAGGAAGGTGACTTGGTAAAAATTGACCTTGGGGTCCATGTGGATGGCTTCATCGCTAATGTAGCTCATACTTTTGTGGTTGATGTAGCTCAGGGGACCCAAGTAACAGGGAGGAAAGCAGATGTTATTAAGGCAGCTCACCTTTGTGCTGAAGCTGCCCTACGCCTGGTCAAACCTGGAAATCAGAACACACAAGTGACAGAAGCCTGGAACAAAGTTGCCCACTCATTTAACTGCACACCAATAGAAGGTATGCTGTCACACCAGTTGAAGCAGCATGTCATCGATGGAGAAAAAACCATTATCCAGAATCCCACAGACCAACAGAAGAAGGACCATGAAAAAGCTGAATTTGAGGTACATGAAGTATATGCTGTGGATGTTCTTGTCAGCTCAGGAGAGGGCAAGGCCAAGGATGCAGGACAGAGAACCACTATTTACAAACGAGACCCCTCTAAACAGTATGGactgaaaatgaaaacttcacGTGCCTTCTTCAGTGAGGTGGAAAGGCGTTTTGATGCCATGCCATTTACTTTAAGAGCATTTGAAGATGAGAAGAAGGCTCGGAtgggtgtggtggagtgtgccAAACATGAACTGCTGCAACCATTTAATGTTCTCTATGAGAAGGAGGGTGAATTTGTTGCCCAGTTTAAATTTACAGTTCTGCTCATGCCCAATGGCCCCATGCGGATAACCAGTGGTCCCTTCGAGCCTGACCTCTACAAGTCTGAGATGGAGGTCCAGGATGCAGAGCTAAAGGCCCTCCTCCAGAGTTCTGCAAGTCgaaaaacccagaaaaagaaaaaaaagaagGCCTCCAAGACTGCAGAGAATGCCACCAGTGGGGAAacattagaagaaaatgaagctgGGGACTGAGGACCGCCAGCAGAGCAGGGGGgatctccctgcccccaccccagttcCCCAACCCACTCCCTTCCAACAACAACCAGCTCCAACTGACTCTGGTCTTGGGAGGCGAGGCTTCCCAACCACGGAAGActactttaaatgaaaaaaagaaattgaataataAAATCAGGAGTCAAAATTCATCGTCTTCAAGCCCCTCTTTCTAGCCTTTTCTACTACTCTCTGCTTGGTCAAGGTTTGTGCCCTACTACAGAACAGGGCTAAATTAGCCACCACCACTGAAAACTCAGCTGAATTTTTTTATACCACTGATGTCAgcatttttccatctgtttggggctttttcctcttttttccattCTCCCCAAATATTTTATCTGGCTTCAAAATTAAGAggattatttttcagattgtttttatTCAGTGTGGCCGATTCCTCATCTGATTCAGGCTGTCCAGCCAGGCCCCTCCCATTTTAGGAGCTGGAGCCTTTATGAAGAgattctcatctatgaaatggaccctcatttgtaaatcttttttcttccattttcacaAAGCTGTAAAGAAATAATCCATCTCAACCTTACCCTTTTCTTTGGAGTCAGTGGGGTCTTTCCTCGCTCCATCTTACACAAACCTGAGGTGGAAGCTCAACTGGTTTTGTTCcctgtttgaaatattgtgatCTCCCTCCCTTGAAAGAAAAACCAAGAACCAGAGGAGTAGACTGACTGAAGACACAACTCCTGGCTTTCTGAAGCTATGGACTTGGATTGGATTGCTGGGGGTTTGTAGAGAAAGGTGACAAATTTCAGTACCTCTGGCATGCTGTCCCAGGAAACTAGGGCTCCCACTAACTTATGAGGTTTTTAAACACACTGAAAATGAcatgacattaaaataaatttggatttGCTCATAATGA

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