Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PSMD10P2
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr13:13198530-13199948  UCSC
Strand -
Parental Sequence XM_003262178.4
Parental seq. overlap 1254 bp
Parental seq. overlap (%) 80.9%
Genomic Region Intragenic (ADNP)
Retrocopy Summary PSMD10P2, located on chr13:13198530-13199948, is a retrocopy of the parental gene PSMD10. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PSMD10
Full Name N/A
Also known as PSMD10
Coordinate chrX:94746244-94753694
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PSMD10P1
Chimpanzee Pan troglodytes PSMD10P3
Bonobo Pan paniscus PSMD10P3
Gorilla Gorilla gorilla PSMD10P3
Orangutan Pongo abelii PSMD10P3
Green monkey Chlorocebus sabaeus PSMD10P1
Crab-eating macaque Macaca fascicularis PSMD10P2
Rhesus Macaca mulatta PSMD10P2
Baboon Papio anubis PSMD10P3
Golden snub-nosed monkey Rhinopithecus roxellana PSMD10P3
Marmoset Callithrix jacchus PSMD10P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PSMD10P2
GAGGGGTGTGTGTCTAACCTTATGGTCTGCAACTTGGCCTACAGAGGGAAGCTGGAGGAGGTGAAGGAGAGGATTCTGGCCAATAAACCCCTGGCTATAAGAACTGACCAGGACAGAAGTGCATTGCACTGGGCATGCTCAGCCAGACATACATAAATTGTTGGATTTTTGTTTCAACTTGGAGTGCCAGTAAATGATAAAGACTATGTGAGATTGGTCTCCTCTTCAGACTGCTGTTTGTGCTGGCCAGAATGAGGCTGTAAAAGCACTTCTGGGAAAAGGTGCACAAGTGAATGCTGTCAATCCAAATGGCTCTACTCCCCTGCATCATGCAGCTTCCAAAAACAGGCATGAGATTGCTCTCATGTTATTAGAAGGTGGGGCTAATCCAGATGGTTAAGGATCATTATGAGCAAAGCACCAGGCCACAGCCAAGGGTAACTTCAAGATGATTCATATCCTTCTGTATTACAAAGCATCCACAAACATCCAAGACACTGAGGGTAATACTCCTCCACACGTAGCCTGTGATAAGAGTGGAAGAAGCAAAACTGCTGGTGTCCCAAGGAGCAATATTTACatagagaataaagaagaaaagaaaccctGCAAGTGGCCAAAGGTGGCCTGGGTTTAATACTCAAGAGAATGGTAGAAGGTTAAACAGCTTGGATTTCTTCTTACTTTCTATGTTGTGATGCTGTCCCCAGTGTCCTGGAAAACTAATGTACTTGGGCACAGGACATCATCTACAAATGTTTCCTCACCTTCAAAGTCTTATAAATATGTTGACTATTGTTCCTGCTGAGGTTCTTGTTCTAAACTTACAGCTTGCTTTCTGGGCACTGAGTAACTGTTGACTGTTCTACTGTTGTCACATATTCTTGTATACTGAATTTCAGCTAATTCTGAGTAAGTGATTCCGTGGCTGTTGTTAATCTTCAGCAACCTCCGAGCATGCGCCTTGTATCAGTCTCTGAAACAGAATAGCTCCAATAGCAACAGGCTAGTCGTTCTGCTAGATGGTTCTAGGTGGACTCCGTGATGTTCTTCCATACAGTTAAACATCCTAACTTGTTTTTCAAGCTCACTCAGGCCTATGCCAAACATTTGTTTTTTCCCCCAACcatgagattttatttttgtgataggaggaatatttacatatttcagtGGACCAAATTTTAAGTTGGGGGTTGTGccctaaaataatgaaaaacaacttTCCATGTACGCGTGTATTTTTTTTGATGAGCTATTTGCCAAGATAAAAcgtatggttttttaaaaaggaagttttaaaGTACCTATATCGAGTCACCTTATATTGAAAAAATGTCAAGCTTGCTAAAATGGTTATGTAACAAAATGTATTCTGATTTGTATTtcagaaactaaaaaataaaatgttgaaagaaa
>XM_003262178.4
GGAGCTCTAACGGCTGTTTTGACTGGCAGCCGGAGCCGGCGACGTGAGGCGGGCGTTGATCGCTCGTCAAGTAGTTGCTGGGACAGCGAAATGGAGGGGTGTGTGTCTAACCTAATGGTCTGCAACCTGGCCTACAGCGGGAAGCTGGAAGAGTTGAAGGAGAGTATTCTGGCCGATAAATCCCTGGCTACTAGAACTGACCAGGACAGCAGAACTGCATTGCACTGGGCATGCTCAGCTGGACATACAGAAATTGTTGAATTTTTGTTGCAACTTGGAGTGCCAGTGAATGATAAAGACGATGCAGGTTGGTCTCCTCTTCATATTGCGGCTTCTGCTGGCCGGGATGAGATTGTAAAAGCCCTTCTGGGAAAAGGTGCTCAAGTGAATGCGGTCAATCAAAATGGCTGTACTCCCCTACATTATGCAGCTTCGAAAAACCGGCATGAGATCGCTGTCATGTTACTGGAAGGTGGGGCTAATCCAGATGCTAAGGACCATTATGAGGCTACAGCAATGCACCGGGCAGCAGCCAAGGGTAACTTGAAGATGATTCATATCCTTCTGTACTACAAAGCATCCACAAACATCCAAGACACTGAGGGTAACACTCCTCTACACTTAGCCTGTGATGAGGAGAGAGTGGAAGAAGCAAAACTGCTGGTGTCCCAAGGAGCAAGTATTTACAttgagaataaagaagaaaagacacccCTGCAAGTGGCCAAAGGTGGCCTGGGTTTAATACTCAAGACAATGGTGGAAGGTTAAACAGCTTggatttattcttattttgtatgTTGTGGTGTTGTCCCCAGTGTCCTACAAACTAATGTATTTGTGCACAGGACATCATCTGTGAATGATGACGTTTTCTCACCTTCAAAGTCTTATAAACATGTTGACTCTTGTTCCTGCTGAGTTACTTGTTCGAAGCTTACAGCTTGTTTTCCAGGCATCAAATAACTGTTGAGATTGTTCTACTGTTGTCGTATATTCTTCTATATTGCATTCTGGTTAATTTGGAGTAACTAATTCTGTGGCTGTTGTGAGTCTTCAGCACCCTCCCATGTACCTTGTATCCCTCTCTGAAACAGAACAGCTCCAATAGCAACAAGCCAGTTGTTCTGCCAGATGTTTCTATGTGGATTCTGTAATGTTCCTCCATACAGTTAAAACATCCTAACTTGTTTTTCAAGCTCACTCAGGCCTATGccaaatgtttctgtttttttcaaccatgaggtttaatttatttttgtgataggagggatatttacatattttagtgGACCACATTTTAAGTTGGATGGTGTgctctaaaataatgaaaaacaatagCCCATATAcctatgtatttgtttttgatgggttgtttactctgaaataaaatgtatggttTTCTTAAAAGGAAGTTTTAAAGTACCTATTTTGAGTCATCCTGTATTGAAAAGAATGTCAAGCTTGTTAAAATGACatgtaacaaaaatgtattttgatttgtatttcagaaactaaaaaataaaatgttcaaagaa

Publications

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