Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS10P3
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr22a). Each line represents a retrocopy.
Species Nomascus leucogenys
Coordinates chr2:45881455-45882014  UCSC
Strand -
Parental Sequence XM_030803314.1
Parental seq. overlap 489 bp
Parental seq. overlap (%) 76%
Genomic Region Intragenic (GLG1)
Retrocopy Summary RPS10P3, located on chr2:45881455-45882014, is a retrocopy of the parental gene RPS10. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS10
Full Name N/A
Also known as RPS10
Coordinate chr22a:55472819-55481697
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS10P46
Chimpanzee Pan troglodytes LOC104001113P20
Bonobo Pan paniscus RPS10P24
Gorilla Gorilla gorilla LOC109025084P23
Orangutan Pongo abelii LOC100439704P21
Green monkey Chlorocebus sabaeus LOC103223049P1
Crab-eating macaque Macaca fascicularis LOC102136572P5
Rhesus Macaca mulatta RPS10P30
Baboon Papio anubis RPS10P31
Golden snub-nosed monkey Rhinopithecus roxellana RPS10P36
Marmoset Callithrix jacchus RPS10P40
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS10P3
TCCAGCCCCGGCCCTGGGCCCTGCAGCCACCAAGATGCTGATGCCTAAGAAGAACGGGATTGCCATCTATGAACTCCTTTTTAAGGAGGGAGTCATGGTGGCCAAGAAGGACGTCCACCTTCCTAAGCACCCAgagctggcagaagacaagaatgtGCCCAACCTTCACATCATGAAGGCCATGCAGTCTCTCAAGTCTTGAGGCTACGTGAAGGAAGTttgtctggagacatttctacTGGTACCTTGCCAACGAGGGTATCCAGTATCTCTGACTACCTCCATCTGCCCTGCAAGACTGTGCCTTCCACCCTACACCACAGTCGTCCAGAGACTGGCAGGCTTTGGCCTAAAGGTCTGGAGGGTGAGCAACCCGCAAAGCTCACAAAAGGGGAAGCCAAAAGACACCCACAGACAGAGCGCCGTGTCCCTTGGTCCGATAAGAAAGCTGAGATCAGGGTTGGGTCAGCAACCAAATTCCAGTTTAGAAGCGGATTTGGTTGTGGGTGTGGTCAGTGACCTCAGTAAAATTGGAGAGGATTATTTTGCATTGAATAAAc
>XM_030803314.1
GGGCGGGCCCACGCCAGCCCGGAAGAGACGCAGCACCGCGCATGCTCCTTCCTTTCCAGCCCCGGCCCCGGACCCTGCAGCTGCAGAGATGTTGATGCCTAAGAAGAACCGGATTGCCATTTATGAACTCCTTTTTAAGGAGGGAGTCATGGTGGCCAAGAAGGATGTCCACATGCCTAAGCACCCGGAGCTGGCAGACAAGAATGTGCCCAACCTTCATGTCATGAAGGCCATGCAGTCTCTCAAGTCCCGAGGCTACGTGAAGGAACAGTTTGCCTGGAGACATTTCTACTGGTACCTTACCAATGAGGGTATCCAGTATCTCCGTGATTACCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACGACGTAGCCGTCCAGAGACTGGCAGGCCTCGGCCTAAAGGTCTGGAGGGTGAGCGACCTGCGAGACTCACCAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCACCTGGTGCCGACAAGAAAGCcgaggctggggctgggtcagCAACCGAATTCCAGTTTAGAGGCGGATTTGGTCGTGGACGTGGTCAGCCACCTCAGTAAAATTGGAGAGGATTCTTTTGCATTGAATAAAACTTACAGCCAAAAAACCTTAA

Publications

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