Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name LOC103223049P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr5:53166082-53166445  UCSC
Strand -
Parental Sequence XM_007975166.1
Parental seq. overlap 313 bp
Parental seq. overlap (%) 34.3%
Genomic Region Intragenic (GLG1)
Retrocopy Summary LOC103223049P1, located on chr5:53166082-53166445, is a retrocopy of the parental gene LOC103223049. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC103223049
Full Name N/A
Also known as -
Coordinate chr19:7487437-7488650
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS10P46
Chimpanzee Pan troglodytes LOC104001113P20
Bonobo Pan paniscus RPS10P24
Gorilla Gorilla gorilla LOC109025084P23
Orangutan Pongo abelii LOC100439704P21
Gibbon Nomascus leucogenys RPS10P3
Crab-eating macaque Macaca fascicularis LOC102136572P5
Rhesus Macaca mulatta RPS10P30
Baboon Papio anubis RPS10P31
Golden snub-nosed monkey Rhinopithecus roxellana RPS10P36
Marmoset Callithrix jacchus RPS10P40
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC103223049P1
ATGCTGATACCTAAGAAGAATGGGATTGCCATCTATGAACTCCTTTTTAAGGAGGGAGTCATGGTGGCCAAGAAGGATGTCCACCTGCCTAAGCACCCAGAGCTGGCAGACAAGAATATGCCCAACCTTCACATCATGAAGGCCATGCAGTCTTTCAGGTCTTGAGGCTACGCGAAGGAACAGTTTGTCTGGAGACATTTCTACTGTACCTTACCAACAAGGGTATCCAGTATCTCCGATTACCTCCATCTGCCCCGCAAGATTGTGCCTGCCACCCTACACCACAGCCGTCCACAGACTGGCAGGCTTTGGCCTAAAGGTCTGGAGGGTGAGCGACCCACAAGGTTCACAAAAGGGGAAGCCA
>XM_007975166.1
AAAAAAAATAAGCCGGCCAGCCGGTGCGCATGCGTCAGGTCTTGGGCTGGAGCCTGGCAAGACCGGTCGCTTCAGAGGCCCCACTAGACCCTGCGGAATGATGCTCAGAGTCAGCAAGTCCCAGAGGCGCTCCTCAGCgtgtttaccgtgtgccaaggactgtcctaggcatgagccagacagtggtgaggaaaacacaaagccctgtcctactggcgctccgggtacataaggaacagacaaataagtgagcaatataaatatatataatatTAAAGAAATTCTGGTAGAGTTCGAGTTCCATCGGCCCCCATCCGGGCCACCCTGCTGCCTTAGCGACTGCTCCTCCCCAGAATGCTTATGCCTAAGAAGAGGCTTGCCATTTATGAACTCCTTTTTAAGGAGGAAGTCGCCGTGGTCAAGAAGGATGTCCACCTGCCTAAGCACCTGGAACCGGCAGATAAGAATGTGCCCAACGTTCATGTCATGAAGGCCATGCAGTCTTTCAAGTCCAGAGGCTACTACATGAAGGAACAGTTTGCCTGGAGACATTTCTACTGGTACCTTATCAATGAGGGTATCCAGTATCTTCGTGATTATCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACACTGCAGCCGTCCAGGGACTGGCAGGCCTAGTCCTAAAGGTCTGAAGGGTGAGCGACCTGCAAGACTCACGAGAGGGGAAGCCGACAGAGATACATACAGAGGGAGTGCTGTGCCTCCTGGTGCCGACAAGAAAACCCAGGCTGGGACTGGGTCAACAACCGAATTCCAGTTTACAGGCGGATTTGGTCGTGGACGCAGTCAGCCACCTCAGTAAAATTGAAAAGGATTATTTTGCATTGAATAAACTTACAGTCAAAAAACTTTAAAAAAA

Publications

PMID - Link Title