Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HSPA8P7
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr17:40210986-40211349  UCSC
Strand +
Parental Sequence XM_008021264.1
Parental seq. overlap 296 bp
Parental seq. overlap (%) 12%
Genomic Region Intergenic
Retrocopy Summary HSPA8P7, located on chr17:40210986-40211349, is a retrocopy of the parental gene HSPA8. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HSPA8
Full Name N/A
Also known as -
Coordinate chr1:114447348-114452693
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HSPA8P23
Chimpanzee Pan troglodytes HSPA8P6
Bonobo Pan paniscus HSPA8P6
Gorilla Gorilla gorilla HSPA8P6
Orangutan Pongo abelii HSPA8P6
Gibbon Nomascus leucogenys HSPA8P11
Crab-eating macaque Macaca fascicularis HSPA8P5
Rhesus Macaca mulatta HSPA8P6
Golden snub-nosed monkey Rhinopithecus roxellana HSPA8P4
Marmoset Callithrix jacchus HSPA8P5
Panda Ailuropoda melanoleuca HSPA8P4
Greater horseshoe bat Rhinolophus ferrumequinum HSPA8P10
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HSPA8P7
GATGACTGCCCTGATCAAGCGTAACTCCACCATCCCCACCAAGCAGACACAGATCTTCACCACCTACTCCGACAACCAACCCGGGGTGCTGATCCAGGTATACGAAGGTGAGAGGGCCATGACGAAGGACAACAACCTGCTAGGGCGCTTTGACCTGACTGGAATCCCTCCAGCACCCAGGGGAGTTCCTCAGATCGAGGTGACGTTTGACATTGATGCCAATGGTATTCTCAATGTCACAGCCATGGACAAGAGCACAGGGAAGGCCAACAAGATCACCATCACCAATGACAAGGGCCGCCTGAGCAAGGAGGAGATTGAGCGCATGGTTCTGGATGCTGAGAAATATAAAGCTGAAGATGAG
>XM_008021264.1
gaggcggagcgcggtggggtgggtgcggaagggggcgaggcCCGAGGAGTGGAGCCGGGCTTGTGATTGGGTCTTGTAAGGGCAGCCTGGCGTCTATTGGCCGGGGAAGCCGTAATGGCAGGCAGCAGGGGCGGGCCCCTTCTGGAAGGTTCTGAGATAGGGTATAAGAGGGAGGGTGGCGGGCGGAAACCGGTCTCATTGAACTTGCCTGCAGCTCCGGGGGCTCCTGTGACTTTTGTCTTTATCGGAGCCAGGCCTACACGCCAGCAACCATGTCCAAGGGACCTGCAGTTGGTATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTTTTCCAGCACGGAAAAGTAGAGATAATTGCCAATGATCAGGGAAACCGAACCACTCCAAGCTATGTTGCCTTTACGGACACTGAACGGTTGATCGGTGACGCTGCAAAGAATCAAGTTGCAATGAACCCCACCAACACAGTTTTCGATGCCAAACGTCTGATTGGACGCAGATTTGATGATGCTGTTGTCCAGTCTGATATGAAGCATTGGCCCTTCATGGTGGTGAATGATGCTGGCAGGCCCAAGGTCCAAGTAGAATATAAGGGAGAGACCAAAAGCTTCTATCCAGAGGAGGTATCCTCTATGGTTCTGACAAAGATGAAGGAAATTGCAGAAGCCTATCTTGGGAAGACTGTTACCAATGCTGTGGTCACAGTGCCAGCTTATTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATTATTAATGAGCCAACTGCTGCTGCTATTGCTTACGGCTTAGACAAAAAGGTTGGAGCAGAAAGAAACGTGCTTATCTTTGACCTGGGAGGTGGCACTTTCGATGTGTCAATCCTCACTATTGAGGATGGAATCTTTGAGGTCAAGTCTACAGCTGGAGACACCCACTTGGGTGGAGAAGATTTTGACAACCGAATGGTCAACCATTTTATTGCAGAGTTCAAGCGCAAGCATAAGAAGGACATCAGCGAGAACAAGAGAGCTGTAAGACGCCTTCGTACTGCTTGTGAACGTGCTAAGCGTACGCTCTCTTCCAGCACCCAGGCCAGTATTGAGATCGATTCTCTCTATGAAGGAATCGACTTCTATACCTCCATTACCCGTGCCCGATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCAGTAGAGAAAGCCCTTCGAGATGCCAAACTAGACAAGTCACAGATTCATGATATTGTCCTGGTTGGTGGTTCTACTCGTATCCCCAAGATTCAGAAGCTTCTCCAAGATTTCTTCAACGGAAAAGAACTGAATAAGAGCATCAACCCTGATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATCCTGTCTGGAGACAAGTCTGAAAATGTTCAAGATTTGTTGCTCTTGGATGTCACTCCTCTTTCCCTTGGTATTGAAACTGCTGGTGGAGTAATGACTGTCCTTATTAAACGTAATACCACCATTCCTACCAAGCAGACACAGACCTTCACTACCTATTCTGACAACCAGCCTGGTGTGCTTATTCAGGTCTATGAAGGTGAGCGTGCCATGACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACGGGCATACCTCCTGCACCCCGAGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATGCCAATGGTATCCTGAATGTCTCTGCTGTGGACAAGAGTACAGGAAAAGAGAATAAGATTACTATCACTAATGACAAGGGCCGTTTGAGCAAGGAAGACATTGAACGTATGGTCCAGGAAGCTGAGAAGTACAAAGCTGAAGATGAGAAGCAGAGGGACAAGGTATCATCAAAGAATTCACTTGAGTCCTATGCATTCAACATGAAAGCAACTGTCGAAGATGAGAAACTTCAAGGCAAGATTAACGATGAGGACAAACAGAAGATTCTGGACAAGTGTAATGAAATTATCAACTGGCTTGATAAGAATCAGACGGCCGAGAAGGAAGAGTTTGAACATCAGCAGAAAGAGCTGGAGAAAGTTTGCAACCCCATCATCACCAAGCTGTACCAGAGTGCAGGAGGCATGCCAGGAGGAATGCCTGGGGGATTCCCTGGTGGTGGAGCTCCTCCCTCTGGTGGTGCTTCCTCAGGGCCCACTATTGAAGAGGTTGATTAAGCCAACCCAAGTATAGGTGTAGCATTGTTCCACACATTTAAAACATTTGAAGGACCTAAATTTGTAGCAAATTCTGTGGCAGTTTTAAAAAGTTAAGCTGCTATAGTAAGTTACTGGGCATTCTCAATACTTGAATATGGAACATGCACAGGGGAAGGAAATAACATTGCACTTTATAAACACTGTATTGTAAGTGGAAAATGCAATGTCTTAAATAAAACTATTTAAAATTGGCACCATAAAA

Publications

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