Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HSPA8P10
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_5) and its respective parental gene (in scaffold_m29_p_25). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_5:102046481-102046684  UCSC
Strand +
Parental Sequence HSPA8_x3
Parental seq. overlap 163 bp
Parental seq. overlap (%) 23.3%
Genomic Region Intergenic
Retrocopy Summary HSPA8P10, located on scaffold_m29_p_5:102046481-102046684, is a retrocopy of the parental gene HSPA8. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HSPA8
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_25:37444195-37449373
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HSPA8P23
Chimpanzee Pan troglodytes HSPA8P6
Bonobo Pan paniscus HSPA8P6
Gorilla Gorilla gorilla HSPA8P6
Orangutan Pongo abelii HSPA8P6
Green monkey Chlorocebus sabaeus HSPA8P7
Crab-eating macaque Macaca fascicularis HSPA8P5
Rhesus Macaca mulatta HSPA8P6
Mouse lemur Microcebus murinus HSPA8P6
Sheep Ovis aries HSPA8P7
Horse Equus caballus HSPA8P6
Dog Canis familiaris HSPA8P7
Panda Ailuropoda melanoleuca HSPA8P4
Cat Felis catus HSPA8P3
Pale spear-nosed bat Phyllostomus discolor HSPA8P6
Velvety free-tailed bat Molossus molossus HSPA8P9
Egyptian rousette Rousettus aegyptiacus HSPA8P2
Sloth Choloepus didactylus HSPA8P6
Opossum Monodelphis domestica HSPA8P24
Platypus Ornithorhynchus anatinus HSPA8P1
Gibbon Nomascus leucogenys Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HSPA8P10
CGGCATCGACCTGGGCACCACCTACTCGTGCGTGGGGGTGTTCCAGCACGGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCCTTCACCGACACCGAGCGGCTCATCGGGGATGCGGCCAAGAACCAGGTAGCCATGAATCCCCAGAACACTGTCTTTGATGCCAAACGCCTGATTGG
>HSPA8_x3
CTCATTGAACGCGGGGTTAGGCGTCAGGATCCGTCTTCGTGAGACGCATTTAAACAGAAGCAACCATGTCTAAGGGACCTGCAGTTGGCATTGATCTGGGCACCACCTACTCTTGTGTGGGTGTCTTCCAACACGGAAAAGTGGAAATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTATGTCGCTTTTACTGATACCGAACGATTGATCGGTGATGCTGCAAAGAATCAAGTTGCAATGAACCCCACCAACACGGTGTTTGATGCCAAACGCCTCATTGGACGTAGATTTGATGATGCTGTTGTTCAATCCGATATGAAGCATTGGCCCTTCATGGTGGTGAATGATGCTGGCAGGCCTAAGGTCCAAGTAGAATACAAGGGAGAGACAAAAAGTTTCTATCCAGAAGAAGTGTCTTCAATGGTTTTGACAAAGATGAAGGAAATTGCAGAAGCCAACCTTGAGCATAAATTTAGCATTGTTCCACATAAAATATGGAAGGACCCAAATTTGTAGCAAATTCACAGCAGTTTTAAAGTTGAGCTGTTATAGTAAGAAAAACTGGGCATTCTTAATACTTGAATATGGAATATGTGCACAGGGAAAGGAAATAACGATGTACTTTATATGCACTGTATTGTAAAGTGGAAAATGCAATGTCTTAAATAAAACTATTTAAAATTGGCACCAT

Publications

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