Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name IDI1P2
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr10:23670089-23670875  UCSC
Strand +
Parental Sequence XM_008002107.1
Parental seq. overlap 744 bp
Parental seq. overlap (%) 36.8%
Genomic Region Intragenic (BFSP1)
Retrocopy Summary IDI1P2, located on chr10:23670089-23670875, is a retrocopy of the parental gene IDI1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name IDI1
Full Name N/A
Also known as -
Coordinate chr9:995608-1011226
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens IDI1P1
Chimpanzee Pan troglodytes IDI1P1
Bonobo Pan paniscus IDI1P1
Gorilla Gorilla gorilla IDI1P1
Orangutan Pongo abelii IDI1P2
Gibbon Nomascus leucogenys IDI1P3
Crab-eating macaque Macaca fascicularis IDI1P3
Rhesus Macaca mulatta IDI1P3
Baboon Papio anubis IDI1P2
Golden snub-nosed monkey Rhinopithecus roxellana IDI1P4
Marmoset Callithrix jacchus IDI1P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>IDI1P2
CAGGACAGATCAGACATTTTGTAATGATGCCTGAAATAAACACTCACCACCTCGATGAGCCACAGGTTCAACTCCTGGCAGAGATGTGTATCCTTATTGATGAGAATGACAATAAAATTGGGGCTGAGACCAAGAAGAATTGTCACCTGAATGAGAACATCGAGAAAGGATTATTGCATCGTGCTTTTAGTGTCTTCTTCAACACTGAAAATAAACTTCTGCTACAGCAAAGGTCAGATGCTAAGATTACCTTTCCAGGTTGTTTTACTAATACTTGTTGTAGTCATCCATTAAGTAATCCAGGTGAGCTTGAGGAAGATGACGCCCTTGGAGTGAGGTGAGCAGCACAGAGGCAGCTGAAAGCTGAGCTAGGAATTCCCTTGGAAGAGGTTCCTTCAGAAGAACTTAATTATTTAACACGAATTCACTACAAAGCTCAGTCGGATGGTATCTGAGGTGAACATGAAATGGATTACATTTTGTTTATGAGGAAGAATGTAACTCTGAATCCAGATTCCAATGAGATTAAAAGCTATTGTTATGTGTCAAAGGAAGAAATAAAAGAACTTCTGAAAAAAAAGCAGCCAATGGTGAAATTAAGATAACGTCATGGTTTCAAATTATTGCAGAGGCTTTTCTCTTTAAATGGTGGGATAAATTAAATCATTCGAATCAGTTTGTTGACCATGAGGAAATATACAGAATGTGAATACGTAGGTGAATGATTACTGAAAAATTTCTCTACTTAACAAACTTAGAATGACTTTTTTCATTTAAATTTAGTTCT
>XM_008002107.1
AAGTGTTCTAGGACAGATCAGACATTTTGTAATGATGCCTGAAATAAACACTGACCACCTCGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGTATCCTTATTGATGAAAATGACAATAAAATTGGGGCTGAGACCAAGAAGAATTGTCACCTGAATGAGAACATTGAGAAAGGATTATTGCATCGAGCTTTTAGTGTCTTTTTATTCAACACCGAAAATAAGCTTCTGCTACAGCAAAGATCAGATGCTAAGATTACCTTTCCAGGTTGTTTTACTAATACTTGTTGTAGTCATCCATTAAGTAATCCAGGCGAGCTTGAGGAAAATGACGCCCTTGGAGTGAGGCGAGCAGCACAGAGGCGGCTGAAAGCTGAGCTAGGAATTCCCTTGGAAGAGGTTCCTCCAGAAGAAATTAATTATTTGACACGAATTCACTACAAAGCTCAGTCGGACGGTATCTGGGGTGAACATGAAATTGATTACATTTTGTTTGTGAGGAAGAATGTCACTCTGAATCCAGATCCCAATGAGATTAAAAGCTTTTGTTATGTGTCCAAGGAAGAACTAAAAGAACTTCTGAAAAAAGCAGCCAGTGGTGAAATTAAGATAACGCCATGGTTTCAAATTATTACAGAGACTTTTCTCTTTAAATGGTGGGATAACTTAAATCATTTGAATCAGTTTGTTGACCATGAGAAAATACACAGAATGTGAATATGCAGGGAAGTGATTACTGAGAAATGTCTCTACTTAACAAACTTAGAATGACTTTTTCAGTTTAAACTTAGTTCTATCATTAATTGATCATTAAATTTAGTTCTATCATTTAATACTATCATGAATGTGTTATATACACTGATACTTTAAAACTTGTGTGGAAAAAACTAACTTATAATTTTGTATCACATGCCCTGGATATGTGTTCTGTTTCTAAGCAACATTTGTAACAGATTATTGTAAAATGAGAGAGAGCAACTAAAACTTAATTTAACCTTTGCAGATAACATACTTACGGGAAATTTGAACAAATAAGTGAAACCCTGTGTGTTTAGTAAGCTGTGATAAACATTTCCGGAGCACTCGCAGAGCACTTGCTATTTGCCAGGTGCTTTATATGTCATTAAATTTTTATCATAGTTCAGAAAAATGTGCAAAGGAAACTATTGTCTCACTCTTTCAAAACAATCCTAATTAACTTTCATATTAGCAGATTAAACTAGCAGAGCAGGTTCAAGGGAAATTAAATGATATGGACCCTAATTTGTATCATTCTGAGTTGATTGTGTGGTTTATTCATTCTGGAAACATGTTGATACTTAAAGTCAACCATTGCTTTTGATAAGTGATATTGATTAGGTTAAATCTTCTTTTAAATAGTATTTACCAGTTAGCAAAGTCTGTGTTTTCAGAATTACAGTGGGCACAGAGGTGTTCATAAAATAGGAATTGTGTCCCACTCGATAagagttgcttaaatttgatactgttcacgtttgggctggatgaaatccttgtggtagggagggttccatgctgtgcattatagggcgatgagcagcatccctggactgcacactggatgctgtttgcatccctctcccgtgacacccacagttataccagatgttgccagatgcccctgggggacaGCGTCAACCGCTGTCCTATAGAGTCAGGAAATATTGTAGGGAGAAAAAAATAACAACGACAAAGGCCAGTGTTCATGTTAAATAGAATGAGATTATGGAATGTGTATATTAATGTTAAAAATTGTACCTTGATCAATGTACTTTTATAAACTTGCCATAGGTATCTCAAATTTGAACTCTCAAGACAGCTTTCTTATTCTTAAATGCTGTATGATAATGAAGAAAAATAAAAATTTATTTCTTACAAAGTTAAATGTTAAATTCAATAGAATGATTCATTTATGGTTACTTTTGGGCAATTTATAATTTCAGACAAGACTGTTTAGCAGGTGTTTTATTGAAAAGTAAAAAAAAATTGCATTTTAA

Publications

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