Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name LOC103215860P3
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr18:19977076-19978617  UCSC
Strand -
Parental Sequence XM_007962672.1
Parental seq. overlap 1323 bp
Parental seq. overlap (%) 40.9%
Genomic Region Intergenic
Retrocopy Summary LOC103215860P3, located on chr18:19977076-19978617, is a retrocopy of the parental gene LOC103215854. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC103215854
Full Name N/A
Also known as NULL
Coordinate chr9:44291037-44854071
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens GLUD1P4
Chimpanzee Pan troglodytes GLUD1P1
Bonobo Pan paniscus GLUD1P1
Gorilla Gorilla gorilla GLUD1P1
Orangutan Pongo abelii GLUD1P2
Gibbon Nomascus leucogenys LOC100587725P1
Crab-eating macaque Macaca fascicularis LOC101926166P2
Rhesus Macaca mulatta GLUD1P2
Golden snub-nosed monkey Rhinopithecus roxellana GLUD1P2
Marmoset Callithrix jacchus GLUD1P2
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC103215860P3
CATTATGGTTATTCCAGATCTCTACCTGAATGCCAAAGGAGGTACAGTGTCCTACTTTGAGTGGGTGAAGAATCTAAATCATGTCAGATATGGCTGTTTGACCTTCAAATATGAAAGGGATTCTAATGACCACTTGCTCATGTCTGTTCAAGAGAATTTAGCAAGAACGTTTGGAAAGCACAGTGGAACTATTCTCATTATACCCACAGCAGAGTTCCAAGACAGGATATCAGGTGCATCAGAGAAAGACACCATGCACACCGACTTGGTGTACACAATGGAGAGTTCTGCCAGACAAATTATGTGCATAGCCATGAAGTTTAACCTGGGATTGGACATGAGAACCACCGTCTATGTCAACGCCATTAAGAAAGTCTTCAAAGTGTACAATGAAGCCAGTGTGACCTTCACGTAGATGGCTCGTGAGTGACTTCCTTGCTACCCTCTTCACCTGTAACTTCTGCAGACCTACCACTGGTTGACACATTGCCACAGAAATCCCCTTCTCTCTTGACTCATTAGATAATGGACACCATTCTTAACAAATCGATCCAAATCAGCCCCCTAAGGAGAAAGAAATTAAGGCTAGTGGTTCATGTACAAGCTGATGGGTGTGAAAGTAGAAATCACCGACACTGGAGAGAGAAACACGTAGGTGTTTTGCCTCTACATAAAAAGTCTCTTTCATCTGGCTGTGCAGCCTTGCTCTGTGGCTCTTCCCAACACAGTCAGCAACTGTTGCCAGGCAAGGCACAGTCAAGAGCAATCAGATGCTTACTTCTTTTGCTCTGGACAAGACTGGGACATGCTGTAACTTTTAAAATATTTAGAAGTAGGTGTGTAGCATTTTCAGAAGGTGGCATGGTCCTCACATGAGTTATTGAAGCAAAATAACTCAATTTTATAGGATGCAAACAAAAATAAAAGCTGTTTCTGCTTATTAATTTTATTCTTTTGGAAAACAATAAGTAATGCTGCTGTAATAAAATTGCTTTTAATCTCTTAACAAGCCTAAACTTGATTCAAGCAGTGAATGCCTATAAACATAATAAATTTTAAAAGCTAGTATTTTTATATAATAAAAGAGTATCATTTAGAGCTTATTAGCCATGTATTATTATCCAGCAAAAATAACAAGCCCTATGGAGAATTAAATTATCTTCATACCTACAAAAATGATGGAGGCTATTTCTGTGAAGATTGTCGGAGTTTGCTGACTATAATTATGACACACAGTCCAAAGAATGCAGTAACCTCCTTATAATGTTAACAAATTGTTCTCTTTTGAAGGTCTATGGTTGACTAATTGAACAATAATTCAAGTAGAATGTTCCAGAAAAAAAAAAAAACCCTTGGGCTCCCTGTTTGGAGATTAGCTGGCCCTGAGCATTGCTAATGGCCTCTACTCAGCCTGATTTTGTGTCCTCTTCTTTTAGAGTCTTTACATTCTGCACTCAGCTTCACAAACAATGGGTTGAAAACAACCTTGGGTTGAGTGTTTTGTTTGGGAATTATTTGGCCAGGTCCTTTTGAACAGTAGTA
>XM_007962672.1
CGCCGCCAGcgaggccgggcgaggccgcggcggaggcggaggccCGGCGCCCTGGGCGGCGCCCTGCCCCGAAGTCCGTCCTCCCCGTTAGGTGGCGAGCGCCCGAGGGGAGGGGACAGCCGGGCAGGCAGGAAGCTACAGCTTAAAAGGGCAACCCGCGCCGGACCCTTCCTCCCTAGTCGCGGGGACTCTGAGAAAGCACTCCTGTTCCGCGACCATCACGCACCTCCTCTCCGCCTGCCGCCATGTACCGCTACCTGGGCGAAGCGCTGCTGCTGTCCCGGGCCTGGCCCGCAGCCCTGGGCTCGGCGGCAACCGACTCGGCCGCGTTGCTGGGCCGGGCCCGGGGACAGCCCGCCGCCGCCCCGCAACCGGGGCTCGCATTGGCCGCACGGCGCCACTACAGCGAGGCGGTGGCCGACCGCGAGGACGACCCCAACTTCTTCAAGATGGTGGAGGGCTTCTTCGACCGCGGCGCCAGCATCGTGGAGGACAAACTGGTGGAGGATCTGAGGACCCGGGAGAGCGAGGAGCAGAAGCGGAACCGGGTGCGCGGCATCCTGCGGATCATCAAGCCCTGCAACCATGTGCTGAGTCTCTCCTTCCCCATCCGGCGCGACGACGGCTCCTGGGAGGTCATCGAAGGCTACCGGGCCCAGCACAGCCAGCACCGCACGCCCTGCAAGGGAGGTATCCGTTACAGCACTGACGTGAGTGTAGATGAAGTAAAAGCTTTGGCTTCTCTGATGACATATAAGTGTGCAGTGGTTGATGTGCCGTTTGGGGGTGCTAAAGCTGGTGTTAAGATCAATCCCAAGAGCTATACTGATAATGAATTGGAAAAGATCACAAGGAGGTTCACCATGGAGCTAGCAAAGAAGGGCTTTATTGGTCCTGGCATTGATGTGCCTGCCCCAGACATGAGCACAGGTGAGCGGGAGATGTCCTGGATCGCTGATACCTATGCCAGCACCATAGGGCACTATGATATTAATGCACATGCCTGTGTTACTGGTAAACCCATCAGCCAAGGGGGCATCCATGGACGCATCTCTGCTACTGGCCGTGGTGTCTTCCATGGGATTGAAAACTTCATCAATGAAGCTTCTTACATGAGCATTTTAGGAATGACACCAGGGTTTGGAGATAAAACATTTGTTGTTCAGGGATTTGGTAATGTGGGCCTACACTCTATGAGATATTTACATCGTTTTGGTGCTAAATGTATCGCTGTTGGTGAGTCTGATGGGAGTATATGGAATCCAGATGGTATTGACCCAAAGGAACTGGAAGACTTCAAATTGCAACATGGGTCCATTCTGGGCTTCCCCAAGGCAAAGCCCTATGAAGGAAGCATCTTGGAGGCGGACTGTGACATACTGATCCCAGCTGCCAGTGAGAAGCAGTTGACCAAATCCAACGCGCCCAGAGTCAAAGCCAAGATCATTGCTGAAGGTGCCAATGGGCCAACAACTCCAGAAGCGGACAAGATCTTCCTGGAGAGAAACATTATGGTTATTCCAGATCTCTACTTGAATGCTGGAGGAGTGACAGTATCTTACTTTGAGTGGCTGAAGAATCTAAATCATGTCAGCTATGGCCGTTTGACCTTCAAATATGAAAGGGATTCTAACTACCACTTGCTCATGTCTGTTCAAGAGAGTTTAGAAAGAAAATTTGGAAAGCATGGTGGAACTATTCCCATTGTACCCACGGCAGAGTTCCAAGACAGGATATCGGGTGCATCTGAGAAAGACATCGTGCATTCTGGCTTGGCGTACACGATGGAGCGATCTGCTAGGCAAATTATGCGCACAGCCATGAAGTATAACCTAGGATTGGACCTGAGAACAGCTGCCTATGTCAATGCCATTGAGAAAGTCTTCAAAGTGTACAATGAAGCTGGTGTGACCTTCACATAGATGGATCGTGGCTGACTTCCTCACTACCCTCTTCACCTGTAACTTCTGCAGACCTATCACAAGTTTACATGTAACCACAGAAATCCCTTTCTCTCCTGACTCAGTAATAATGGATACCATTCTCAACAAGTCAATCCAAATCAGCCCCTGAAGGAGAAAGAAATTAAGGTTAGGGGATCATGTACAAGCTGAGTGTGAAAGTAGAAATCACCTACACCAGAGAGCCATTTGGGTATTTTGCCTTTAAATACAAAGTCTCCTCCATCTGGCTGTGCAGCCTTGCTCTGTGGCTTTTCCCAACACAATCAGTGCTGTTGCTGGGGAAGGGACAGGCAAGAGCAGTCAGTTGCTTGCTTATTTTGCTCTGGACAAGTCTGGGACACGCTGTAACTTTAGCACATTTAAGAAGTAGGTGTGTGGCCTTTTCAGAAGGTGGCATGGTCCTCAAGTGAGTTCTTAGTATTTTATATCAGCAAAATAACTCAATTTTGCAGGTTGCAAACAAATATAAAAGCTGTTTCTGTTTATGAATTCTATTCTTTTAGAATAAAATAAGTACATGCTGCTGTAATAAAATTGCCTTTAATCACTTAACAAGCCTAACCTTGACTCAAACAGTGAATGCCTATAAAAATAATAAATGAAAAAAACTAGTATTTTTATATCATAAAACTGTCATTTATAGCTTATCAGTCATGTATTGTCCAGCAAACATTAAAAGACCTGTGGATAATTAAGTTTTCTTCATACCTGCAAAGTGGTGGAGGCTATTTTTGTTAAAACTGTCAGAATTTGCTAAGTATAATTATGACACATAGTCCAAAGAATGCAGTAAACTTTTTATCATGTTAACTAATTGTTCTCTTTTGAAGATCTATGGTTGACTAATTAAACAGTAATTCAAGTGGAGTGTCATAGAAAAAAACCACTTGGGCTCCCTGTTTGGAGTCTGGCTGGCTCTGAGCATTGCCAATGGGCCCTACTCACCTGACTTTGTGTCCTCTCCTTTTAGAGGTTTTCCATTCTGCACCCAGCTTCGCTAACAGTGGACTGAAAACAACCTTGGGTTGAATGTTTTGTTTGGGAGTTATTTGGCCAGGGCCTTCTGAGCAGTAGTGTCCCCATGAAGTGCTAGATATAATAATATGTGTAAGAATCAGCCtttttttttttttttttttttttAACTATAACATCCTTTCAGAAATTTCTAACTACTTTGTAACTGCATGGCTTAACCTGGTGATAAAAGCAGTTATTAAAAGTCTACGTTTTCCAAAACTTA

Publications

PMID - Link Title