Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name UBE2NP3
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Chlorocebus sabaeus
Coordinates chr7:118491600-118492784  UCSC
Strand -
Parental Sequence XM_008004246.1
Parental seq. overlap 1076 bp
Parental seq. overlap (%) 60%
Genomic Region Intergenic
Retrocopy Summary UBE2NP3, located on chr7:118491600-118492784, is a retrocopy of the parental gene UBE2N. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UBE2N
Full Name N/A
Also known as -
Coordinate chr11:88810505-88842895
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBE2NP2
Chimpanzee Pan troglodytes UBE2NP1
Bonobo Pan paniscus UBE2NP1
Gorilla Gorilla gorilla UBE2NP1
Orangutan Pongo abelii UBE2NP1
Gibbon Nomascus leucogenys UBE2NP1
Crab-eating macaque Macaca fascicularis UBE2NP1
Rhesus Macaca mulatta UBE2NP1
Baboon Papio anubis UBE2NP1
Golden snub-nosed monkey Rhinopithecus roxellana UBE2NP2
Marmoset Callithrix jacchus LOC100390645P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>UBE2NP3
GAGACCAGAGGCCCAACTTGGGACCTGACAGGATGGCTGGGCTGCCCTGCAGGATCATCAAGGAAACCCAGCTTTTGCTGGCAAAACCAGTTCCTAGAATCAAAGCACAACCATATGAGAGCAACACCCACTATTTTCACGTGGTCATTGCCGGCCCCCGGGATTCCCCCTTTGAAGGAAGGACTTTCAAACTTGAACTATTTCTTCCAGAAGAATACCCAATGGCAGCCCCTAAAGTGCGCTTCATGACCAAAATTTGTCATCCTAATGTAGACAAGTTGGGGAGAATATGTTTAGATATTTTGAAAGGTAAGTGTTCCCCAGCTGTGCAGATCCACACAGTTCTGCTATCGATCCAGGCCTTGTTAAATGCTCCCAATCCAGATGATCCACTAGCAAATTATATAGAGGAGCAGTGGAAGACCAACGAAGCCCAAGCCATAGAAACTGCTAGAGCAGGGACTAGGCTATCTGCCATTAATAATATTTAAATTGATCCGATCATCAAGTATGCATCACTTCTCTTGTTCTGCCAAGACTTCTTTCTTTTGGTTTGCATTTAAGGGGCACAGTCTTAGAAACATTACAGAATAAAAGCCCAGACTTCTTCAGTCATTTGGTGATTAAATGCACGTTAGCAAATCTATGTCTTGTCCTGATTCACTGTTGTAAAGTATGAGCAGAGGCCAGAAGTGTCATTTGGACTGTTGGGAAATGTTTAAAAGCAGTGGCCCCTCTCTGCTTTTATTCATTACCCCAATCCTGGTTTAAGTGTAAAGCACTGTGAATTAAGGTAGTTGTCAGGTTAGCTGCAGGGGTATGGGTGTTTTTCATTTTATTTTGTTTTATTTTTTGAGGGGGGAGGTAGTTTTATTTTAATTCGTGAGCTCCTTTCCCACTTTTTTTGGTGATCTAATTGCATTGGTTAAAAACAGCTAACCAGTTCTTTAGAATATGTTCCCTAGCCAGGTCTAACTTTATTTAGATGCTGAAGATGGACAAACTTGATTGTTTGAACCAGAATGGGAAAGTTAAACAAACATCACAGCTCTCAATAATAACACTATGACTTTGCTGTCAAGTATAGATGACCCCCTTCAAAAAAACTTTGTGACCATTTTGTATGGCTTGTCTGGAAACTTCTGTAAATCTTATATTTGAGTAAAATATTTTTTGTTATTc
>XM_008004246.1
GCGCGAATCGCGCGGTACCACCGTCGCGGGCAGGCTCGGCCACGAGCGCCGGAGCCCCGCGCCTCCCCGCGAGGCGTCTCCAAAGTCCCTGCCCCGCCGCGGAGCGTCACTTCCGCCATCCCCGGCCGGGGTTGGGGCGGGGCGCGCGGGGGAGGGGGCCAGGTCGGAGGGAAGCCCGCCCGTGCCCGAGCCCGCGCCTGAGCAGGGACTACATTTCCCGAGGGGCCTAggcggcggctgcggcgacgggcgcggcAACGTCCCCCGGAAGTGGAGCCTGGGACTTCCACTCGTGCGTGAGGCGAGCGGAGCCGGAGACGAGACCAGAGGCCGAACTTGGGTTCTGACAAGATGGCCGGGCTGCCCCGCAGGATCATCAAGGAAACCCAGCGTTTGCTGGCAGAACCAGTTCCTGGCATCAAAGCAGAACCAGATGAGAGCAACGCCCGTTATTTTCATGTGGTCATTGCTGGCCCTCAAGATTCCCCCTTTGAGGGAGGGACTTTTAAACTTGAACTATTCCTTCCTGAAGAATACCCAATGGCAGCCCCTAAAGTACGTTTCATGACCAAAATTTATCATCCTAATGTAGACAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATCGATCCAGGCCTTGTTAAGTGCTCCCAATCCAGATGATCCATTAGCAAATGATGTAGCGGAGCAGTGGAAGACCAACGAAGCCCAAGCCATAGAAACAGCTAGAGCATGGACTAGGCTATATGCCATGAATAATATTTAAATTGATCCGATCATCAAGTGTGCATCACTTCTCCTGTTCTGCCAAGACTTCCTCCTTTTTGTTTGCATTTAATGGACACAGTCTTAGAAACATTACAGAATAAAAAAGCCCAGACATCTTCAGTCCTTTGGTGATTAAATGCACATTAGCAAATCTATGTCTTGTCCTGATTCACTGTCATAAAGCATGAACAGAGGCTAGAAGTATCATCTGGATTGTTGTGAAACGTTTAAAAGCAGTGGCCCCTCCCTGCTTTTATTCATTTCCCCCATCCTGGTTTAAGTATAAAGCACTGTGAATGAAGGTAGTTGTCAGGTTAGCTGCAGGGGTGTGGGTGtttttctttattttattttattttttttGAGGGGGGAGGTAGTTTTATTTTTAATTTTATGGGCTCCTTTCCCCCTTTTTTGGTGATCTAATTGCATTGGTTAAAAGCAGCTAACCAGGTCTTTAGAATATGCTCTCTAGCCAAGTCTAACTTTATTTAGACGCTGTAGATGGACAAGCTTGATTGTTTGAACCAAAATGGGAACATTAAACAAACATCACAGCCCTCACTAATAACATTGCTGTCAAGTGTAGATTCCCCCCTTCAAAAAAAGCTTGTGACCATTTTGTATGGCTTGTCTGGAAACTTCTGTAAATCTTATGTTTTAGTAAAATATTTTTTGTTATTCTACTTTGCCTTTGTACAGTTTATTTTACTGTGTTTATTTCATTTTCCCAATGTGACAATCGTATTTTAAAATTAAAACTATGGAACATTCTGTCTTAGTCTTCACCATCTGGCAAACTGAATGGCAAGAGGTGGATTTCGCCAGTTTCTTTTCACTGATGCAGATTTGTGTTAAGATAGTACTGAATGGAGTATTTATAAACTGGCCCTGAGCATGCATAAAGCATCAGTATCTGACCTTTTTTTAACCCCCTAGGAATTTGAAATAAATGTGTTTGTGTTGTCTGA

Publications

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