Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ITM2BP1
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr17:20557239-20557482  UCSC
Strand -
Parental Sequence XM_003913861.3
Parental seq. overlap 205 bp
Parental seq. overlap (%) 12.3%
Genomic Region Intragenic (KSR1)
Retrocopy Summary ITM2BP1, located on chr17:20557239-20557482, is a retrocopy of the parental gene ITM2B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ITM2B
Full Name N/A
Also known as -
Coordinate chr15:26629096-26657831
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ITM2BP1
Chimpanzee Pan troglodytes ITM2BP1
Bonobo Pan paniscus ITM2BP1
Gorilla Gorilla gorilla ITM2BP1
Orangutan Pongo abelii ITM2BP1
Gibbon Nomascus leucogenys ITM2BP1
Green monkey Chlorocebus sabaeus ITM2BP1
Crab-eating macaque Macaca fascicularis ITM2BP1
Rhesus Macaca mulatta ITM2BP1
Golden snub-nosed monkey Rhinopithecus roxellana ITM2BP1
Greater horseshoe bat Rhinolophus ferrumequinum ITM2BP2
Egyptian rousette Rousettus aegyptiacus ITM2BP1
Sloth Choloepus didactylus ITM2BP2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ITM2BP1
GTGATCCTGCCAGCAATGTTCATGACCTTAACAAGAAGCTTGCAGCCTGTTTAGATCTTAGCCTGGACAACTGCTGGGTGATCCCTCTGAAGACTTCAATTGTTATGCTGCCCAAATACGGACTGGAGTTGCTTATTAACATCAAGTCTGTTTTGTCCCAATCCTATCTGATTCATGGACACACGGCTATCACTGATGGCACTGAAAACACTGAGCCCTGGAGTTTCTTCATATATCACTGTGC
>XM_003913861.3
AGTGGGTGCGCGAGCCGTCTCCGCCTTCGCGCGGGAGCTGGGAGGCTGCGAGAGCCCTACCGCAGTAGCCGCCTCTGCCGCCGCGGAGCCTCCCGAACCTCCTCAGCCGCCCGGAGCCGCGCCCGGAGCCCGGCTATAGAGGCTGCAGTCGCAGCCGGGAGCCCGCAGCCCGCGCCCCGAGCCCGCCGCCGCCCTTCGAGGGCGTCCCAGGCCGCGCCATGGTGAAAGTGACGTTCAACTCCGCTCTGGCCCAGAAGGAAGCCAAGAAGGACGAGCCCAAGAGCGGCGAGGAGGCGCTTATCATCCCCCCCGACGCCGTCGCTGTGGACTGCAAGgacCCAGATGATGTGGTACCAGTTGGCCAAAGAAGAGCCTGGTGTTGGTGCATGTGCTTTGGACTGGCATTTATGCTTGCAGGTGTTATTCTAGGAGGAGCATACTTGTACAAATATTTTGCACTTCAACCAGATGACGTGTACTACTGTGGAATAAAGTACATCAAAGATGATGTCATCTTAAATGAGCCCTCTGCAGATGCCCCAGCTGCTCTCTACCAGacaattgaagaaaatattaaaatctttgaagaagaagaagttgaatTTATCAGTGTGCCTGTTCCAGAGTTTGCAGATAGTGATCCTGCCAACATTGTTCATGACTTTAACAAGaaacTTACAGCCTATTTAGATCTTAACCTGGATAAGTGCTATGTGATCCCTCTGAACACTTCCATTGTTATGCCACCCAGAAACCTACTGGAGTTACTTATTAACATCAAGGCTGGAACCTATTTGCCTCAGTCGTATCTGATTCATGAGCACATGGTTATTACTGATCGCATTGAAAACATTGATCACCTGGGTTTCTTTATTTATCGACTGTGTCATGACAAGGAAACTTACAAACTGCAACGCAGAGAAACTATTAAagGTATTCAGAAACGTGAAGCCAGCAATTGTTTCGCAATTCggcattttgaaaacaaatttgcCGTGGAAACTTTAATTTGTTCTTGAATAGTCGAGAAAAACATTATTGAGGAAAATTAATACCACAGCATAATCCCACCCTTTACATTTTGTgcagtgattattttttaaaatcttctttcatGTAAGTAGCAAACAGGGCTTTACTATCTTTTCATCTCATTAATTCAATTAAAACCattaccttaaaatttttttctttccaagtgtGGTGTCTTTTGTATTTGAATTAGTAACTGTATGAAGTCATAGATAATAGTACATGTCACCTTAGGTAGTAGGAAGAATTACAATTTCTTTAAATCATTTATctggatttttatgttttattagcATTTTCAAGAAGACGGATTATCTAGAGAAtaatcatatatatgcatacgtAAAAATGGACCACAGTGACTTATTTGTAGTTGTTAGTTGCCCTGCTACCTAGTTTGTTAGAGCATTTGAgcacacattttaattttcctctaaTTAAAATGTGCAGTATTTTCAGTATCATATTTAACTATTTAGAGAATGATTTCCACCTTTATGTTTTAATATCCTAGGCATCTGctgtaataatattttagaaaatgtttggaaTTTAAGAAATAACTTGTGTTACTAATTTGTATAACCCATATCTGTGCAATGGAATATAAATATCACAAAGTTGTTTAACTAGA

Publications

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