Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101001180P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in NW_022163852). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr3:36073668-36074700  UCSC
Strand +
Parental Sequence XM_003901005.4
Parental seq. overlap 962 bp
Parental seq. overlap (%) 67.6%
Genomic Region Intragenic (TRIM2)
Retrocopy Summary LOC101001180P1, located on chr3:36073668-36074700, is a retrocopy of the parental gene LOC101001180. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101001180
Full Name N/A
Also known as ANXA2
Coordinate NW_022163852:253653-302972
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ANXA2P1
Chimpanzee Pan troglodytes ANXA2P1
Bonobo Pan paniscus ANXA2P1
Gorilla Gorilla gorilla ANXA2P1
Orangutan Pongo abelii ANXA2P1
Gibbon Nomascus leucogenys ANXA2P1
Green monkey Chlorocebus sabaeus ANXA2P1
Crab-eating macaque Macaca fascicularis ANXA2P1
Rhesus Macaca mulatta ANXA2P1
Golden snub-nosed monkey Rhinopithecus roxellana ANXA2P1
Marmoset Callithrix jacchus ANXA2P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101001180P1
agctCAGCATCTGGGGATACTCTCAGATCTCGGTGCTCAGCCCAGCTTCCTTCAAAATGTCTACTGTTCATGAAATCCTGTGCAAGTTCAGCTTGGAGGGTGAACACTCTACACCCCTAAGTGCATATGGGTCAGTCAAAGCCTACACCAACTTTGATGCTGAACAGGATACTTTGAACACTGAAATGGCCATCAAGACCAAAGGTGTGGATGAGATCACCACTGTCAACATTTTGACTAACCACAGCAATGCACAGAGACAGGATATTGCCTTCACCTGCCAGAGAAGGACCAAAAAGGAACTTGCATCAGCACTGAAGTCAGCCTTATCTGGCCACCTAGATAGTGGCTTTGGGCCTATTAAAGACACCTGCTCAGTATGACGCTTCTGAGCTAAAAGCTTCCATGAAGGGGCTGGGAACCAACGAGGACTCCCTCATTGAGATCATCTGCTGGAAAACTAACCAGGAGCTGCAGGAAATTAACAGAGTCTAAAGGAAATGTACAAGACTGATCTGGAGAAGGACATTATTTCAGACACATCTGGTGACTTCTGCAAGTCACCAGATGCGTTGCCCTAGCAAAGGGTAGAAGAGCAGAAGATGGCTCTGTCATTGATTATGAACTGATTGACCAAAATGCCCGGGATCTCTATGACACTGGGGTGAAGAGGAAAGGAACTGATGTTCCCAAGTGGATCACCATCATGACCGAGCAGAGCATGTCCCACCTCCAGAAAGTATTTGATAGGTACAAGAGCTACAGCCCTTATGACATGTTGGAGAGCATCAAGAAAGAGGTTAATGGAGACCAAGAAAATGCTTTCCTGAAGCTGGTCCAGTGTATTCAGAACAAGCCCCTGTATTTTGCTGACTGGCTGTACCACTCCATGAAGGGCAAGGGGACTCGAGATAAAGGTACTGATCAGAATCATGGTCTCCCACAATGAAGTGGACATGTTGAAAATTAGGTCTGAATTCAAGAGAAAGTACAGCAAGTCCCTGTACTATTACATCCAGCAAGACACTAAGGG
>XM_003901005.4
GCCGAGGGAGGATATGGCGAGTATAAAAGCCCCACCCAGGCCAGCCGGCTCTGCTCGGCATCTGGGGACGCTCTCAGCTCTCGGCGCACGGCCCAGCTTCCTTCAAAATGTCTACTGTTCATGAAATCCTGTGCAAGCTCAGCTTGGAGGGTGATCACTCTACACCCCCAAGTGCATATGGGTCAGTCAAAGCCTACACCAACTTTGATGCTGAGCGGGATGCTTTGAACATTGAAACAGCCATCAAGACCAAAGGTGTGGATGAGGTCACCATTGTCAACATTTTGACCAACCGCAGCAATGCACAGAGACAGGATATTGCCTTCGCCTACCAGAGAAGGACCAAAAAGGAACTTGCATCAGCACTGAAGTCAGCCTTATCTGGCCACCTGGAGACGGTGATTTTGGGCCTATTGAAGACACCTGCTCAGTATGACGCTTCTGAGCTAAAAGCTTCCATGAAGGGGCTGGGAACCGACGAGGACTCTCTCATTGAGATCATCTGCTCCAGAACCAACCAGGAGCTGCAGGAAATTAACAGAGTCTACAAGGAAATGTACAAGACTGATTTGGAGAAGGACATTATTTCGGACACATCTGGTGACTTCCGCAAGCTGATGGTTGCCCTGGCAAAGggtAGAAGAGCAGAGGATGGCTCTGTCATTGACTATGAACTGATTGACCAAGATGCCCGGGATCTCTATGACGCCGGAGTGAAGAGGAAAGGAACTGATGTTCCCAAGTGGATCAGCATCATGACGGAGCGGAGCGTGCCCCACCTCCAGAAAGTATTTGATAGGTACAAGAGCTACAGCCCTTACGACATGTTGGAGAGCATCAGGAAAGAGGTTAAAGGAGACCTGGAAAATGCTTTCCTGAACCTGGTCCAGTGCATTCAGAACAAACCCCTGTATTTTGCTGACCGGCTGTATGACTCCATGAAGGGCAAGGGGACTCGAGATAAGGTCCTGATCAGAATCATGGTCTCCCGCAGTGAAGTGGACATGTTGAAAATTAGGTCTGAATTCAAGAGAAAGTACGGCAAGTCCCTGTACTATTACATCCAGCAAGACACTAAGGGCGACTACCAGAAAGCGCTGCTGTACCTGTGTGGTGGAGACGACTGAAGCCCGACACAGCCTGAGCGTCCAGAAATGGTGCTCGCCATGCTTCCAGCTAACAGGTCTAGAAAACCAGCTTGCGACTAACAGTCCCTGTGAGGGTGACATTAGCATTGCCCCCAACCTCATTTTAGTTGCCTAAGCATTGCCTGGCCTTCCTGTCTAGTCTCTCCTGTAAGCCAAAGAAATGAACATTCCAAGGAGCTGGAAGTGAAGTCTATGATGTGAAACACTTTGCCTCCTGTGTACTGTGTcataaacagatgaataaactgaattTGTACTTTGAAACACGT

Publications

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