Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name ANXA2P1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr4:153307461-153308817  UCSC
Coordinates (T2T) chr4:156631879-156633235  UCSC
Coordinates (hg19) chr4:154228613-154229969  UCSC
Strand -
Parental Sequence NM_004039.3
Parental seq. overlap 1270 bp
Parental seq. overlap (%) 81.7%
Genomic Region Intragenic (TRIM2)
Retrocopy Summary ANXA2P1, located on chr4:153307461-153308817, is a retrocopy of the parental gene ANXA2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ANXA2
Full Name annexin A2
Also known as ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV
Coordinate chr15:60347151-60398025
Strand -
Gene summary This gene encodes a member of the annexin family. Members of this calcium-dependent phospholipid-binding protein family play a role in the regulation of cellular growth and in signal transduction pathways. This protein functions as an autocrine factor which heightens osteoclast formation and bone resorption. This gene has three pseudogenes located on chromosomes 4, 9 and 10, respectively. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. Annexin A2 expression has been found to correlate with resistance to treatment against various cancer forms. [provided by RefSeq, Dec 2019]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes ANXA2P1
Bonobo Pan paniscus ANXA2P1
Gorilla Gorilla gorilla ANXA2P1
Orangutan Pongo abelii ANXA2P1
Gibbon Nomascus leucogenys ANXA2P1
Green monkey Chlorocebus sabaeus ANXA2P1
Crab-eating macaque Macaca fascicularis ANXA2P1
Rhesus Macaca mulatta ANXA2P1
Baboon Papio anubis LOC101001180P1
Golden snub-nosed monkey Rhinopithecus roxellana ANXA2P1
Marmoset Callithrix jacchus ANXA2P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ANXA2P1
GCTCAGCATCTGGGGACGCTCTCAGGTCTTGGTGCCCAGCCCAGCTTCCTTCAAAATATCTGCTGTTCATGAAATCCTGTGCAAGCTCAGCTTGGAGGGTGAACACTCTACACTCCCAAGTGCATTTGGGTCAGTCAAAGCCTACACCAAATTTGATGCTGAGCAGGATGCTTTGAACATTGAAATGGCCATCAAGACCAAAGGTGTGGATGAGATCACCACTGTCAACATTTTGACTAACCACAGCAATGCACAGAGACAGGATATTGCCTTCACCTACCAGAGAAGGACCAAAAAGGAACTTGTATCAGCACTTAAGTCAGCCTTATCTGGCCACCTAGATAGTGGCTTTGGGCCTATTAAAGACACCTGCTCAGTATGATGCTTCTGAGCTAAAATCTTCCATGAAGGGGCTGGGAACCAACAAGGACTCCCTCATTGAGATCATCTGCTCAAGAACCAACCAAGAGCTGCAGGAAATTAACAGAGTCTACAAGGAAATGTACAAGACTGATCTGGAGAAGGACATTATTTCGGACACATCTGGTGACTTCTGCAAGCTGATGGTTGCCCTGGCAAAGGGTAGAAGAGCAGAGGATGGCTCTGTCATTGATTATGAACTGATTGACCAAGATGCCCGGGATCTCTATGACGCTGGGGTGAAGAGGAAAGGAACTGAAGTTCCCAAGTGGATCAGCGTCATGACCGAGCGGAGCATGTCCCACTTCCAGAAAGTATTTGATAGGTACAAGAGCTACAGTCCTTATGACATGTTGGAGAGCATCAAGAAAGAGGTTAAAGGAGACCTGGAAAATTCTTTCCTGAACCTGGTCCAGTGTATTCAGAACAAGCCCCTGTATTTCGCTGACCGGCTGTACGACTCCATAATGGGCATGGGGACTCAAGATAAGGTCCTGATCAGAATCATGGTCTCCCACAATGAAGTGGACATGTTGAAAATTAGGTCTGAATTCAAGAGAAAGTATAGCAAGTCCCTGTACTATTACATCCAGCAAGACACTAAGGGTGCTGTACCTGTGTGGTGGAGATGGCTGAAGTCCGACACAGCACGAGCGTCCAGAAATGGTGCTCCCCATGCTTCCAGCTAACAGGTCTAGAAAACCCGCTTGTGACTAGCAGTCCCTGTGGCTGTTCCTGTGAGGATGACGTTAGCATTGCCCCCAACCTCATTTTAGTTGCCTAAGCATTGCCTGGCTTTCCTGTCTAGTCTCTCCTGTAAGCCAAAGAAATGAACATTCCAAGGAATTGGAAGTGAAGTCTATGATGTGAAACACTTTGCCTCCTGTGTACTGTGTCATAAACGGATTAATAAACTGAATTTGTACTTTAGAAACAA
>NM_004039.3
GCTCAGCATTTGGGGACGCTCTCAGCTCTCGGCGCACGGCCCAGCTTCCTTCAAAATGTCTACTGTTCACGAAATCCTGTGCAAGCTCAGCTTGGAGGGTGATCACTCTACACCCCCAAGTGCATATGGGTCTGTCAAAGCCTATACTAACTTTGATGCTGAGCGGGATGCTTTGAACATTGAAACAGCCATCAAGACCAAAGGTGTGGATGAGGTCACCATTGTCAACATTTTGACCAACCGCAGCAATGCACAGAGACAGGATATTGCCTTCGCCTACCAGAGAAGGACCAAAAAGGAACTTGCATCAGCACTGAAGTCAGCCTTATCTGGCCACCTGGAGACGGTGATTTTGGGCCTATTGAAGACACCTGCTCAGTATGACGCTTCTGAGCTAAAAGCTTCCATGAAGGGGCTGGGAACCGACGAGGACTCTCTCATTGAGATCATCTGCTCCAGAACCAACCAGGAGCTGCAGGAAATTAACAGAGTCTACAAGGAAATGTACAAGACTGATCTGGAGAAGGACATTATTTCGGACACATCTGGTGACTTCCGCAAGCTGATGGTTGCCCTGGCAAAGGGTAGAAGAGCAGAGGATGGCTCTGTCATTGATTATGAACTGATTGACCAAGATGCTCGGGATCTCTATGACGCTGGAGTGAAGAGGAAAGGAACTGATGTTCCCAAGTGGATCAGCATCATGACCGAGCGGAGCGTGCCCCACCTCCAGAAAGTATTTGATAGGTACAAGAGTTACAGCCCTTATGACATGTTGGAAAGCATCAGGAAAGAGGTTAAAGGAGACCTGGAAAATGCTTTCCTGAACCTGGTTCAGTGCATTCAGAACAAGCCCCTGTATTTTGCTGATCGGCTGTATGACTCCATGAAGGGCAAGGGGACGCGAGATAAGGTCCTGATCAGAATCATGGTCTCCCGCAGTGAAGTGGACATGTTGAAAATTAGGTCTGAATTCAAGAGAAAGTACGGCAAGTCCCTGTACTATTATATCCAGCAAGACACTAAGGGCGACTACCAGAAAGCGCTGCTGTACCTGTGTGGTGGAGATGACTGAAGCCCGACACGGCCTGAGCGTCCAGAAATGGTGCTCACCATGCTTCCAGCTAACAGGTCTAGAAAACCAGCTTGCGAATAACAGTCCCCGTGGCCATCCCTGTGAGGGTGACGTTAGCATTACCCCCAACCTCATTTTAGTTGCCTAAGCATTGCCTGGCCTTCCTGTCTAGTCTCTCCTGTAAGCCAAAGAAATGAACATTCCAAGGAGTTGGAAGTGAAGTCTATGATGTGAAACACTTTGCCTCCTGTGTACTGTGTCATAAACAGATGAATAAACTGAATTTGTACTTTAGAAACACGTACTTTGTGGCCCTGCTTTCAACTGAATTGTTTGAAAATTAAACGTGCTTGGGGTTCAGCTGGTGAGGCTGTCCCTGTAGGAAGAAAGCTCTGGGActgagctgtacagtatggttgcccctatccaagtgtcgctatttaagttaaatttaaatgaaataaaataaaataaaatca

Publications

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