Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name PDCL3P7
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr8:97262355-97263336  UCSC
Strand -
Parental Sequence XM_003909034.3
Parental seq. overlap 894 bp
Parental seq. overlap (%) 43.8%
Genomic Region Intragenic (NCALD)
Retrocopy Summary PDCL3P7, located on chr8:97262355-97263336, is a retrocopy of the parental gene PDCL3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PDCL3
Full Name N/A
Also known as -
Coordinate chr14:102232666-102247920
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PDCL3P2
Chimpanzee Pan troglodytes PDCL3P6
Bonobo Pan paniscus PDCL3P6
Gorilla Gorilla gorilla PDCL3P6
Orangutan Pongo abelii PDCL3P4
Gibbon Nomascus leucogenys PDCL3P8
Green monkey Chlorocebus sabaeus PDCL3P4
Crab-eating macaque Macaca fascicularis PDCL3P5
Rhesus Macaca mulatta PDCL3P5
Golden snub-nosed monkey Rhinopithecus roxellana PDCL3P4
Marmoset Callithrix jacchus PDCL3P3
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PDCL3P7
GCACAACTGGCTTGAGCGATTGGAAACAAGATGCAGGACCCCAAGACAGGCACTGTGTGGAATGACATCTTAGGCAAAAAGGGCATCTTACCCACCAAGAAAAGTCTAAAAGAATtggaagaggaggcagaagaggagcAGTGCATCCTTCAGCAGTCAGTGGTGACAACATACAAAGATATGACTTTGGAAGAGCTGGAGGATGATGAAGACAAGTTTAATGAGGAGGATGAACATGCTATTGAAATGTACAGATGGCCGAGACTCGCTGAGTGGAAAGCAATTCAACTGAAGAACACATTTGGAGAAGTTTTGGAGGTCTCAAGGAAGTATTATGTTCAAGAAGTTACCAAAGCTGGTGAGGGCTTGTGGGTCATCTTGCACCTTTATAAACAAGGAATTCCCCTCTGTGCCCTGATAAATCAGCACCTCCGTGGACTTGCCAGAAAGTTTCCTGATGTCAAATTTATCAAAGCCATTTTCAACAACCTGCATACCCAATTATCCTGATAGGAATCTGCCCATGATATTTGTTACCTGGAAGGAGACATCAAGGCTCAGTTGATCAGTCCTCTGGCATCTGGCGGCATGAACCTGACAAGAGATGAGTTGGGGTGAAAACTGTCTGAATCTGGAGCAATTAAGATGGACTTGGAGGAAAACCCTAAGAAGCTGATTAAAGATGTGTTGCTGTCCTCAGTGCGGAGCTCTGTCCCCATGAGGAGGGACAGCAATTCTGAGGGTGACTGAGGCTGCAGCTGCTATCACATGCTGAACTTTCTTGTGACAAATtgtctggattttttaaaaaaagaaaaagcaagaatgaatccttttggtttttagttttgtataaattatgtttcaaatctttacattttagaaataatcatTGCTGGAAATTCCGTTAAATATTTTGGAActctttttttaaactatagtatttcctctaaaaaaaattaaaaccagctattggtatgga
>XM_003909034.3
CTTTACAGGTTTGGGCAGGCAGCTGGAAAAGGCACACGGCCCAGGGCTCCTCCtccacccagccccacccctcctCGGCTGAAGACCAGCCCTAATAAGGCAGCCACCAGAATTAGCACCAGGTCAAGTGCACTCCAGGCGGGACAGTGGGCAGACCCTACCTCGCGCATGCGAATAGCTTCAGTGCCGGCTCCTTCAAGAGCGGGCGCAGACTCAAAGCCGTTGCTTCCGCCCTTACTCCCCTCAGCTCGTCCCTGGGCGGGGCGGAGGCAGGGCTGGGCGAAGAGGCGTGACGGCGCTGTGCGCGTGCACAAAAGGGAGCTGTGGTGGGCGCGCCGCGGCACAGCTGGCTTGAGCAACTGGAGACAAGATGCAGGACCCCAACGCAGACACTGAGTGGAATGACATCTTACGCAAAAAGGGTATCTTACCCCCCAAGGAAAGTCTGAAAGAACTGGAAGAGGAGTCAGATGAGGAGCAGCACATCCTCCAGCAGTCAGTGGTGAAAACATATGAAGATATGACTTTGGAAGAGCTGGAGGATCATGAAGATGAGTTTAATGAGGAGGATGAACGTGCTATTGAAATGTACAGACGGCAGAGACTGGCTGAGTGGAAAGCAACTAAACTGAAGAATAAATTTGGAGAAGTTTTAGAGATCTCAGGGAAGGATTATGTTCAAGAAGTTACCAAAGCTGGCGAGGGCTTGTGGGTCGTCTTGCACCTTTACAAACAAGGAATTCCCCTGTGTGCCCTGATAAATCAGCACCTCAGTGGACTTGCCAGGAAGTTTCCTGATGTCAAATTTATCAAAGCCATTTCAACAACCTGCATACCCAATTATCCGGATAGGAATCTGCCCACGATATTTGTTTACCTGGAAGGAGATATCAAGGCTCAGTTTATTGGTCCTCTGGTGTTTGGCGGCATGAACCTGACAAGAGATGAATTGGAATGGAAACTGTCTGAATCTGGAGCAATTATGACGGACCTGGAAGAAAACCCCAAGAAGCCGATTGAAGACATGTTGCTGTCCTCAGTGCGGCGCTCTGTCTTCATGAGGAGGGGCAGCAGTTCCGAGGGTGACTGAGGCTACAGCTGCTATCAACATGCCGAACTTTCTTGTGACAAATtgtctggattttttaaaaaaggaaaaagcaagaatgaatccttctgttttttagttttgtataaattatgtttcaaatctttacattttagaaataatcatTGCTGGAAATTCTGTTAAATATTTTggagctctttttttttagagtatttcctctaaaaaaattaaaaccagccATTTGTATGGCAAATGtctgttttcctcatttatattttaagccATAAAACCTAGTCACTATTTTTTGACatataactataaaaaatatagttttaaatgtgAATAAATTATGCAGTGGAAAATTGCAAACTAAGCCTTATAgatacattgtttatttttattttataaagagagCAATGAGATTATTAACTCAAAATACAGGAATGCTCTCTAGGACAAAAGAATCTtagtatttattgaagaaacagaCAATTTTTGTGAAACATTCCCGTATCGAAGCAATAACAGAAAGGTTCCAGTTTACTGCCATATTTGGTTAAATGTGTTTCCTTGCTAAAATAGTTAATCTCAGActgttaactaatttttttttgagatagagctttgctgtgttgctgaggctggagtgcagtggcaacaatctcagctcactgcagcctccgcctcctgggttcaagcaattttcctgcctcagcctgctgaggagatgggattacagacgtgcaccaccatgcccggctgattttgtacttttagtagagtttcatcatgttggccgagctggtctcaaactcctaaccccaaactcggcttcccaaagtgttgggattacaggtgtgaaccactgtgcctgccctGTTAACTAATTTTGATTACTGTAAGAGgacattgaattaatttttggaaATATATAAGCATACACATAAATAAACTATCTCAATCAATAAA

Publications

PMID - Link Title