Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PTP4A1P6
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Papio anubis
Coordinates chrX:118027965-118028384  UCSC
Strand +
Parental Sequence XM_009205433.4
Parental seq. overlap 345 bp
Parental seq. overlap (%) 8.2%
Genomic Region Intergenic
Retrocopy Summary PTP4A1P6, located on chrX:118027965-118028384, is a retrocopy of the parental gene PTP4A1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PTP4A1
Full Name N/A
Also known as -
Coordinate chr6:58904464-58954776
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PTP4A1P5
Chimpanzee Pan troglodytes PTP4A1P6
Bonobo Pan paniscus PTP4A1P6
Gorilla Gorilla gorilla PTP4A1P6
Orangutan Pongo abelii PTP4A1P5
Gibbon Nomascus leucogenys PTP4A1P6
Green monkey Chlorocebus sabaeus PTP4A1P7
Crab-eating macaque Macaca fascicularis PTP4A1P8
Rhesus Macaca mulatta PTP4A1P8
Golden snub-nosed monkey Rhinopithecus roxellana PTP4A1P2
Mouse lemur Microcebus murinus PTP4A1P11
Pig Sus scrofa PTP4A1P3
Dolphin Tursiops truncatus PTP4A1P7
Horse Equus caballus PTP4A1P6
Dog Canis familiaris PTP4A1P5
Velvety free-tailed bat Molossus molossus PTP4A1P1
Greater horseshoe bat Rhinolophus ferrumequinum PTP4A1P1
Egyptian rousette Rousettus aegyptiacus PTP4A1P4
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PTP4A1P6
GTGAGATTTCTTATTATACACAACCCAACCAATACCTACTTTAATAGATTCTTACAGGAACTTAAGCAGAATGGAGTTACCACCATAGTGAGAGTATGAGAAGCGACTTACAACATTGCTCTTTTGGAGAAGGAAGGCATCCAGATTCCGGACTGGCCTTTTGATGATGGTACAGCACCATCCGGTCAGATAATTGATAACTGGTTAaaacttatgaaaaataaatttcgtGAAGATCCTGGTTGTTGTATTGCAATTCACTGTGTTGTAGGTTTTGGGCGAGCTCCAGTTGCTAGTGGCCCTAGCTTTAATTGAAGGTGGAATGAAATATGAACATGTAGTACAGTTCATCAGATAAAAGTGACATGGAGCTTTTAACATTAAACAACTTTTGTATTTGGAGAAATATTGTCTTAAAAT
>XM_009205433.4
ATACTCTCCCCATCTTCTATAGCATTAAGTTTTGCGAAGcAATTCTGTGGTGTTCTTGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGAGATTACTGCCAGGCACAGCACGACCTCTATGCAGACAAGTGAACTGTAGAAACTGATTACTACTCCACCAAGAAGCCCCCATAAGAGTGGTTATCCTGGACACAGAAGTGTTGAATTGAAATCCACAGAGCATTTTACAAGAGTTCTGACCTGGATGGGGTAAACCTCAGTGCACTTCTTTTCTGTTGGCCTCAGTATTACTGGATTGAAGAATTGCTGCTTCTTGTTAGGAGGTTCATTTCATTTATCATTACTTACAACTTCATACTCAAGCACTGAGAATTTCAAGTGGAGTATATTGAAGTAGACTTCAGTTTCTTTGCATCATTTCTGTattcgattttttttttaattatttcataacCCTATTGAGTGTTTTTTAACTAAATTAACATGGCTCGAATGAACCGCCCAGCTCCTGTGGAAGTCACATACAAGAACATGAGATTTCTTATTACACACAATCCAACCAATGCgaccttaaacaaatttatagagGAACTTAAGAAGTATGGAGTTACCACAATAGTAAGAGTGTGTGAAGCAACTTACGACACTACTCTTGTGGAGAAAGAAGGTATCCATGTTCTTgattggcCTTTTGATGATGGCGCACCACCATCCAACCAGATTGTTGATGACTGGTTAAGTCTTGTAAAAATTAAGTTTCGTGAAGAACCTGGTTGTTGTATTGCTGTTCATTGCGTTGCAGGCCTTGGGAGAGCTCCAGTACTTGTTGCCCTAGCATTAATTGAAGGTGGAATGAAATACGAAGATGCAGTACAATTCATAAGACAaAAGCGGCGTGGAGCTTTTAACAGCAAGCAACTTTTGTATTTGGAGAAGTATCGTCCTAAAATGCGGCTGCGTTTCAAAGATTCCAACGGTCATAGAAACAACTGTTGCATTCAATAAAATTGGGGTGCCTAATGCTATTGGAAGTGGAACTTGAGATAGGGTCTAATTTGTTATACATATTAGCCAACATGTTGGCTTAGTAAGTCTAATGAAGCTTCCATAGGAGTATTGAAAGGCAGTTTTACCAGGCCACAAGCTAGACAGATTTGGCAACCTCTGTATTTGGGTTACAGTCAACCTATTTGGATACTTGGCAAAAGATTCTTGCTGTCAGCGTATAAAATGTGCTTGTCATTTGTATCAATTGACCTTTCCCAAAATCATGGAGTATTGAGTTATGACTTGTTTAAATCTATTCCCATGCCAGAATCTTATCAATACATAAGAAATTTAGGAAGATTAGGTGCCAAAATACCCAGCACAatacttgtatatttttagtacCATACAGAACTAAAATCCCAGGAACTATGAACACTCTAGACCTTATGTGGTTTATTCCTTCACTCATTTCAAACATTGAAAGTAGGGCCTACATGGTTATTTGCCTGCTCACTTTATGTTTACATCTCCCACATTCATACCGGTATACATCAGGTTTGCTtaaccattgattttttttttttttttttttttaccaagtcTTACAGTGattatttaatatgtttctaTAAATCTCACTTTGTGCTGTTATTAAAAAAACCTCCATTTTGAAAATCTACATTGTACAGAAGCACATGTCTTTAATGTCTTCAGACAAAAAAGCCTTACATTAATTTAATGTTTGCACTCTGAGGTGCAACTTAACAGGGAGGGCCTGAGAAAAGAATGGGAGGgggctattaattatttttagcaaaatgtTGCCTTTGTCTTGTGCAGAACATGTAGAATATGCTCtttaatttagtaaaatatttttttaaaaggcagagatgCTTTGTTATTGTAATCATAAACTTCCTgaaattcttgtaatttttttttccatacttaTCAGAAGCGTGTTTAccaacttatttttgtttgaaagtgtgatttttttttttccttcccaacctctcttgcaaaaaaagaaatgggtttCTGCTAATGAATTGAGCAGACATCTAATATTTTATATGCCTTTTGAGCTGTGTAACTTAATATTTGGATActtgataatttgttttattatgtaattGGTAAAATGGTGATGTGTATTAATGTTAGTTCAACCATATATTTATACTGTCTGGGGATGTGTGGTTATAGTTCTGTGGGAGAAATAATTTTGTCAGTGTTCACCAGCTTGTAAAAACTTAGTGCGAGAGCTgaaacatctaaataaataatgacatgCATTTATCACCATTGAGATTGTTTTGcttaaaattaacttattttgtaGAAAACAAATGAATTGCACTTCACTTAATGTGTGTCCTCatctttttacaaataaatgaagGATTATAAATGATGTCAGCATTTTAGTAAGCTGTTAGACAAAATTTGTTAGGGTCGTTCATGAAAACTGTTTTAATACTAAAAGCACTTTccattatatactttttaaaggtCTAGATAATTTTGAACCAATTTATTATTGTGTACTGAGGAGAAATAATGTATAGTAGAGGAGGACAGCCTTGGTTTCTAAAGCTCAGTTCTACTAGTTGCATGGTTTTGTGCaacttctgagcctcagttttctcctttgcaaattaataattacatacctttatagattttgaaattaatttaaatgttagtATTTGGCTTACTGTTAAGTTTCCTTTAATGATCCAAAATAATCCCTTTGATAGTTCATGTTAATCTAAATCTAGATgtctttgtctaattttttttgaatagCAGTTATAAATGTAAAGGACTCCAAGTTTAAGTAAAAAGTGATACTCTACCTTGTGTTTCAAAGAATTTAGTTCCACCTCTTCATACCAGTTTAACACTTAATATATTCCATTGAATTTTAGACAGGCAAAAGGAAGAACAGGGGCCTCTGGAGGCCCTTGGTTATTTAAATCTTGGATTATTTATGATAATAATCACAAATTTTTGACTGTTTAacctgagcttttttttttttttttaaaggaaatacagCCTAGTCttgatgagaaaataattttatatcatcAATTACTAAATGTTAAACTATTACCACACAGCCCATAAAACAGCATTTGCGTTTATTGAGAGAGAGGATGTGCCATCATGATTAATGAAAAATATCTTTTGAGtttgaaaagaaattaatttgcAGTGTTTGGATTGTATATATGgtgctaaaaataaattaatttactttATAAACCTTATCTGTACATTATACGATGTGATGAAATTTGCTTTTTATCCaaatattttgtatcttgtaAATATGGCTAATTATAGGAATGCCTATAATACATCTTAGATTCCTGATATCTAATACGAGTTCAAAGAGTTATGAGTTGAAGTCTTGAATGCAAGAAACTATCTGATGGTGTTCTAAAATTTGGTTAGTTGGGTTTGGATGGGATGGTGTAAATAGAGACTAGTTGCCTAGGCTTATCTATAAAAACCATAATGTTGCTGATGTAAGTAATGCAGTTACTGAATCATAAGAAAATGCCATCTCTTTTTAGTTGAAGGAAAACTCTGGAAGTAGGTGCCATTGGTCATTCTGCAGTGCACTGCAACCATTGTTTCCCCTAGTGCCCTCTTTTCCCTAGGGCATTGCTCTCCTATTCCCACACCTTAACACAGCTCTATACCTAGAAGCAGCCAGCCCAGGCATGCAGTCACATTTAATCACATCCCCTTTCTAGAGTGCTTCAAAATGATGTAGTCCCTCAACTTGGCTAGAGAATCTCAATCTCTAGTTAAATGTCATATTCATCTggtaaatatttactgtttgCCAGGCATTTAAGAGTATGGCAAAGAACATGAAAGATGGTGTCACTAGATTTTGGTCACCAATGAGTACCCCACCCCTTGCCATGATTAAGAGAGAATGCTTTCTATTGGAGTTTcaagaaatataatttgagaATACTTTAAAGGGAAGTGGAAGTAtaagtgaatatttttcttttacatgtaaACAATGAAGTTAATtcaaagtaagttttaaaatacatgaagtagTGTCTGCCGTACATGTTTATATTCTACATTCTTGCTTCCTTAAattaatgtttgtgtgtgtatatgtgcctcACACCTGAATTGAAAATTAAAGACTGGTTTAAAAGTGA

Publications

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