Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name TFDP1P2
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Papio anubis
Coordinates chr4:59588144-59589272  UCSC
Strand -
Parental Sequence XM_009192289.2
Parental seq. overlap 999 bp
Parental seq. overlap (%) 35.6%
Genomic Region Intragenic (CD36)
Retrocopy Summary TFDP1P2, located on chr4:59588144-59589272, is a retrocopy of the parental gene TFDP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name TFDP1
Full Name N/A
Also known as -
Coordinate chr15:91396511-91451507
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TFDP1P4
Chimpanzee Pan troglodytes TFDP1P3
Bonobo Pan paniscus TFDP1P2
Gorilla Gorilla gorilla TFDP1P2
Orangutan Pongo abelii TFDP1P2
Gibbon Nomascus leucogenys TFDP1P3
Green monkey Chlorocebus sabaeus TFDP1P1
Crab-eating macaque Macaca fascicularis TFDP1P2
Rhesus Macaca mulatta TFDP1P2
Golden snub-nosed monkey Rhinopithecus roxellana LOC104671369P1
Marmoset Callithrix jacchus TFDP1P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>TFDP1P2
gccagagGTCTGGTCCGAAAGGCTCTGGAGCCATACGTGACAGAAATGGTGCAGGCAATTGTTGCAGGCATGTTCATCACAATGGCAGGTTCCACGTCTAATGGCACGAGGCTCTCTGCCAGTGACCTGACCAATGGTGCAGGTGAAATGCTGACCACAAGCTCCAACAGGTCTCCGTACAGCATCTCCAGGGTGAAGACCCTGGTGTCCCAGGTTGGGGAGGACGAAGAGGATTATGACGAGGACAACTGACGTCCTCTCCATTTCAATTTCAGCTTCAGGAAAATGTTTAGGAAAAgaagcttctttttttaatgtgggttttctgtttccttttggcCTACTCTCAAGAAGATATTGGTAAGCTATTGAACTTTGACATGCACCTCCGGTAAGCAAGGATTGTTTCCCATAGAATTAGGATGTGCTGTGGATGTGCGGTTTGATGCCAGTGTGCTGATGCAGAGCCTTCATATACTTTTTaggattttgtgttttcattttctatttttcttaaaatgcagaGTTCATTTTTGCCCCTTAAGGGTTTTTGCTGAGCTTGCTGAAAAATTGTACTTCATCCACATAAACGCCCTCGTGTTGCGGATGGTGAGCACCAAATGCCGTTTATTTGCCGTGAGTTAGGACGGCACCCCCTGTTGGCGGATAGCGAGACTCGGCGGAGTTTTATGTTTGTTCAGTGGTGTGGTGTCTAGAGCTCCAAGCAAACAGCAGAATTCGACTTTCCAACGAATAGACACCGTCAACCTTATCGACTTTATTTTCCCTTAAATTATATTGACAGTTGTGATTCCAATCAAGTTTATACACTCTTTTCTCTCCCCATTTTGCAGCAACAAATTGCAaagtgcttttgtttgtttgttttggctctGTTTGGTTAAAGGTTATTGCCAGGCTGGTACAGCTATGGAGACTGTCTGGAAAGCTTGAAATGGTTTATTGCTTATGGTAAAATTTGGCTGATTTCTCACAGGCAGCGTCTGGAAACCTTTTATTATACAATTGCTCACATACTTAAAAGTCTATCATTTAAAGACATACTGAAACAAATGTTATACTTGTTTCCTAAGCATCTTCCTGTAATctattataaaattgaaattag
>XM_009192289.2
gaggccGCCCCACGGCGGCCCGCGGGGACCCGGTTCCGGCGCGCGCGGGAGGCGCCTCGTGCGGAGGCGGCCCGAGGCCTAGTGACAGGCGCGCGGCGCGGACCCCGGAAGCCCACCTGTCAGAGTTACCGGTCAGCCGGGCGGGCGCCGCCGGGGTCTGGGGTGGACGCCGCGAGCCTGCACGTTGCGCCGGGACCCTGGGGCTGCGCCCAGaaaaatcatttttcttctctgggaAGGTGAACATTTGTAGCATTTATTTCCCGGATCTGGTAACATGGCAAAAGATGCCGGTCTAATTGAAGCCAACGGAGAACTCAAGGTCTTCATAGACCAGAACCTTAGTCCCGGAAAAGGCGTGGTGTCCCTCGTGGCTGTTCACCCCTCCACTGTCAACCCGCTCGGGAAGCAGCTCTTGCCAAAAACCTTTGGACAGTCCAATGTCAACATTGCCCAGCAAGTGGTAATTGGTACGCCTCAGAGACCGGCAGCGTCAAACACCCTGGTGGTAGGAAGCCCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGGGAAGCGCaacaggaaaggagagaagaatggcAAGGGCCTGCGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGAAAGGGACCACTTCCTACAACGAAGTGGCGGACGAGCTGGTCGCGGAGTTCAGTGCTGCCGACAACCACATCTTACCAAACGAGTCAGCTTATGACCAGAAGAACATAAGACGGCGCGTCTACGATGCCTTAAACGTGCTGATGGCCATGAACATCATCTccaaggagaagaaggagatCAAGTGGATTGGTCTGCCCACCAACTCGGCTCAGGAATGTCAGAACTTAGAGGTGGAAAGACAGAGGAGActtgaaagaataaaacagaaacagtCTCAACTTCAAGAACTTATTCTACAGCAAATTGCCTTCAAGAACCTGGTGCAGAGAAACCGGCATGCGGAGCAGCAGGCCAGCCGGCCGCCGCCACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAACACCAGCAAGAAGACGGTCATCGACTGCAGCATCTCCAATGACAAATTTGAGTATCTGTTTAATTTTGACAACACATTTGAAATCCACGATGACATAGAAGTGCTGAAGCGGATGGGCATGGCTTGTGGACTGGAGTCGGGGAGCTGCTCTGCCGAAGACCTTAAAATGGCCAGAAGTCTGGTCCCCAAGGCTCTAGAGCCGTACGTGACAGaAATGGCTCAGGGAACTGTTGGAGGCGTGTTCATCACGACGGCAGGTTCCACGTCTAACGGCACAAGGTTCTCTGCCAGTGACCTGACCAACGGCGCAGATGGGATGCTGGCCACAAGCTCCAATGGGTCTCAGTACAGCGGCTCCAGGGTGGAGACCCCGGTGTCCTACGTCGGGGAGGACGATGAGGAGGACGATGACTTCAATGAGAATGACGAGGACGACTGATGTCCTCCCCACTTCAAATTCAGCTTCAGGAAAACGTTTaggaaaagaaactttttttttaatgtgggttttctgttccttttggcCTACTCCCAAGAAGATATTGGTAAGCTATTGAATTTAGATATGCACCTCTAATAAGCAAGGATTGTTTCCCGTAGGATTAGGATGTGCTGTGGATGTGTGTTTTGATACCAGTGTGCTGATGCAGAgcgtttatttactttttaggattttgtgttttcatttgctatttttctttaagtgCAGAGTTCATTTTTGCCCCTGAAAAGTTTTTGCTGAGTTTGCTGAAGAAATTGTATTTCATCCACatccatgaaaataaaacaccCTCCTGTTGTGGACGGTGAGCACCTGATGCCGCTTATTTGCCGTGAGTTTGGACGGCGCCCCCGATGCCACTTATTTGCCGTGAGTTTGGATGGCGCCCCCTGATGCCACTTACTTGCCGTGAGTTTGGACAGCGCCCCTGCTGGCGGATAGCGAGACTGTGGAGTTTGTTCAGTGGTACGGTGTCCAAGCAAACAGCAGAATTCGACTTTCTAAACAGCCCTAAGCAAACAGCAGAATTCGactttttaaacaataaacaCCATCAACCTTATTGACTTTATTGTCCCTTAAATTATATTGACTGTTGTGATTCCATCAAGTTTATACACTCTTTTCTCTCCCTATTTTGCAGCAACGAATTGCGaagtgcttttgtttgtttgtttttgtttggttaaaGCTTATTGCCACGCTGGTGCGGCTATGGAGACTGTCTGGAAGGCTTGGAATGGTTTATTGCTTATGGTAAAATTTGCCTGATTTCTTACAGGCAGTGTTTGGAAACCTTTTATTATATAGTTGTTTACATACTTATAAGTCTATCATTTAAAGACATCTACTGAAACAAATGTATTTGTTTCATAAGCATCTTCCTGTAATctattataaaattgaaattaaatatagagaatgttttaacaattttttaactcaaaatttgtcaatcatttttaatagttctttttttataaaaagaaaaaggaatttaagGACAGGCAGtagtctcttttaaaatttattcacaaAACCCATTAACTGCACAGTTGCTATTAGCTGCCTGTTCTAAAACGATAGTCTTTTTATTGAAACACAAATAaacttttctgtaatattttatggAATATAAAGAGACTTTAATTGTTTGACTTGTTTAACTTGGCACTGttagtttttattaataaaacgCGCATGGGCATTTTAAACAA

Publications

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