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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104668952P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr22). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr5:87481289-87481627  UCSC
Strand +
Parental Sequence XM_010371759.2
Parental seq. overlap 281 bp
Parental seq. overlap (%) 20.1%
Genomic Region Intragenic (FUT8)
Retrocopy Summary LOC104668952P1, located on chr5:87481289-87481627, is a retrocopy of the parental gene LOC104668952. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104668952
Full Name N/A
Also known as LOC104668952
Coordinate chr22:2625773-2643322
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus LOC103246988P1
Crab-eating macaque Macaca fascicularis EIF1AXP1
Rhesus Macaca mulatta EIF1AYP1
Baboon Papio anubis EIF1AXP1
Marmoset Callithrix jacchus EIF1AYP1
Mouse lemur Microcebus murinus EIF1AXP1
Pig Sus scrofa EIF1AXP1
Dolphin Tursiops truncatus EIF1AXP1
Horse Equus caballus EIF1AXP2
Cat Felis catus EIF1AXP1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104668952P1
TAGGTAATCAAAATGAAGGGAAACAGACGATTAGGATCAATGTGCTTTGATGGTGTAAAGAGGTTATGTCATATGAGaggaaaattgagaaaaaagaGGTGAATCAATACCTCGGACATCATATTGGTCTGTGAGACTATCAGGATAACAAAgctgatgttattttaaaatataatccacATGAAGCTAGAAGTCTAAAGGCATATGGCAAGATTCTAGAATCTgctaaaatcaataaaaccaataTACTTGGTCCTAGAGATGATAAAATCCAGTGTCTTATTGATATTGGAGATGATGATAAGATCTTGATGATACCTAAATTAAATTCAATGTTTT
>XM_010371759.2
CTATTGCTGACGCCAGAGAGTGTGCGTCCGCAGTTTATCAGAGAGCTGCGTGGCCAGCCCCTTGTGCGCACCAACTTGCGGCATCTTCACTCAGGCTTCTCTTAGAGTAGTAGTAACAGCCAGAAAGGAGTCGGAAGAGGTCCCACGAGGCTGTCTTCACCGCTATGCCCAAGAATAAAGGTAAAGGAGGTAAAAACAGGCGCAGGGGTAAAAATGAGAATGAATCTGAAAAAAGAGAGCTGGTGTTTAAAGAAGATGGACAAGAGTATGCTCAGGTAATCAAAATGTTGGGAAATGGACGGTTGGAAGCACTGTGTTTTGATGGTGTAAAGAGGTTATGCCATATCAGAGGGAAATTGAGAAAAAAGGTTTGGATAAATACTTCAGACATTATATTGGTTGGTCTACGAGACTATCAGgATAACAAAGCTGATGTAATTTTAAAGTACAATGCAGATGAAGCTAGAAGCCTGAAGGCATATGGCGAGCTTCCAGAGCATGctaaaatcaatgaaacagacaCATTTGGTCCTGGAGATGATGATGAAATCCAATTTGATGATATTGGAGATGACGATGAAGACATTGATGATATCTAAATTGAACTGAATGTTTTTACATGACAAGTTTTCTGAGGATTGTTCTACAGTTGGGATTTTGGCCATCGTCAGTTAAGAAGAGAAATTCATTTAGTGTGTTGTTTCTGAAAGCAAActgatttattttcaatattttaaagtatttatttctttggaaGCTGATGACCCTGAATTATCTTGTTAAATGTTAATACTTTATTGTTTCGATGTAATGGAACTTAGGAATAAAAGACCGTAATAGTTgccattaaaagaaataaacGAATGCCTTTCCTACTCTAATAACTTCAAgtaatgggatattttgaatACATTTCTGCCTTACAGTCATGCTGGGTTCTAATAAGCCCTACTTCCAGCTAATCTGTTTATAGTCTTTATGTTTCAGTTACTTACATATTCTTGTAAGGTTTCTGATAAAATTTGAATACAGAAATCTCCatttagaatcagaaaaaaattgactttTCCATGTGTATCTAACCATATGTATTTTTACAGTAACACTGATACTTTATAAATTGGTTTTGTCCTTTGTGCACCagttattaaggaaaaaaatatgtccAACACACCGTTTTTGAAGTGTGGCAGTTTTGAATAGTAATTTAGAATGTGTAAGATTAAGAGTTGCAGAAATTGAACAATAGGTGGCAACCAATTATCTTAACATTGGAAATACTAGGAtgccattttgttttgaaaagttaTTCATTGTAACCCACTGTTTTGCCTTTTATGAACAAGTGAATTACAATGTATAAATGAAAAACTGATTTCATAATAAATTCTCTAAACT

Publications

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