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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name EIF1AYP1
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chrY). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr7:127620284-127620608  UCSC
Strand -
Parental Sequence NM_001145052.1
Parental seq. overlap 272 bp
Parental seq. overlap (%) 46.8%
Genomic Region Intragenic (FUT8)
Retrocopy Summary EIF1AYP1, located on chr7:127620284-127620608, is a retrocopy of the parental gene EIF1AY. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name EIF1AY
Full Name N/A
Also known as -
Coordinate chrY:5853436-5870114
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus LOC103246988P1
Crab-eating macaque Macaca fascicularis EIF1AXP1
Baboon Papio anubis EIF1AXP1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104668952P1
Marmoset Callithrix jacchus EIF1AYP1
Pig Sus scrofa EIF1AXP1
Horse Equus caballus EIF1AXP2
Cat Felis catus EIF1AXP1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>EIF1AYP1
AGGTGATCAAAATGAAGGGAAACAGACGATTAGGATCAATGTGCTTTGATGGTGTAAAGAGGTTATGTCATATGAGAGGAAAATTGAGAAAAAAGAGGTGAATAAATACCTCAGACATCATATTGGTCGGTGAGATTACCAGGATAACAAAGCTGATGTTATTTTAAAATATAATCCACATGAAGCTAGAAGTCTAAAGGCATATGGCAAGATTCTAGAATCTGCTAAAATCAATAAAACCAATATACTTGGTCCTATAGATGATAAAATCCAATGTCTTATGATATTGGAGATGATGACAAAGATCTTGATGATACCTAAATTA
>NM_001145052.1
GGCTGTCTTCACCGCTATGCCCAAAAATAAAGGTAAAGGAGGTAAAAACAGGCGCAGGGGTAAAAATGAGAATGAATCTGAAAAAAGAGAGCTGGTGTTTAAAGAGGATGGACAAGAGTATGCTCAGGTAATCAAAATGTTGGGAAATGGACGATTGGAAGCACTGTGTTTTGATGGTGTAAAGAGGTTATGCCATATCAGAGGGAAATTGAGAAAAAAGGTTTGGATAAATACTTCAGACATTATATTGGTTGGTCTACGAGACTATCAGGATAACAAAGCTGATGTAATTTTAAAGTACAATGCAGATGAAGCTAGAAGCCTGAAGGCATATGGCGAGCTTCCAGAGCATGCTAAAATCAATGAAACAGACACATTTGGTCCTGGAgatgatgatgaaatccaatttgatgatattggagatgacgatgaagacattgatgatATCTAAATTGAACTGAGTGTTTTTACATGACAAGTTTTCTGAGGATTGTTCTACAGTTGGGATTTTGGCCATCATCAGTTAAGAAGAGAAATTCATTCAGTGTGTATTTCTGAAAGCAAACTGATTTATTTT

Publications

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