Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC104673976P3
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr3:158278488-158278985  UCSC
Strand +
Parental Sequence XM_010378163.2
Parental seq. overlap 419 bp
Parental seq. overlap (%) 50.4%
Genomic Region Intragenic (DIAPH1)
Retrocopy Summary LOC104673976P3, located on chr3:158278488-158278985, is a retrocopy of the parental gene LOC104673976. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC104673976
Full Name N/A
Also known as LOC104673976
Coordinate chr17:7229362-7232501
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS27AP10
Chimpanzee Pan troglodytes RPS27AP6
Bonobo Pan paniscus RPS27AP6
Gorilla Gorilla gorilla RPS27AP9
Orangutan Pongo abelii RPS27AP7
Gibbon Nomascus leucogenys RPS27AP3
Green monkey Chlorocebus sabaeus RPS27AP18
Crab-eating macaque Macaca fascicularis RPS27AP6
Rhesus Macaca mulatta RPS27AP6
Baboon Papio anubis RPS27AP6
Marmoset Callithrix jacchus RPS27AP9
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC104673976P3
TCACCAAAACACAAATTTTCATAAAAATCCTTAAGGGGGAGGCCATCACTCTTGAGGTTGAACCCTtggataaaacagaaaatataaaggcCAAAATCCAGGATAAGGAAGGAATTCCTCCTGACCAATAAAGACTCATCTTTGCTGGCAAGCAACTGGAAGGCGGATGTGCTTTGTCTAACTACAGCATTCAAAAGGAGTCCACTCTTCATCTTGAGACTTTGTGGTAGGgctaagaaaaagaagttttacACTACTCCCAAGAAGAGTAAGCATGAGAAGAAGGTGAATCTGGCTGTCCTGAAACACCATAAGGCCAATGAGAATGGCAAAAGTAGACAACTTCGTTGGGCGTGCCCTTCAGATGGTAGTGTTACAGTGTTTATGGCCAGCCGGCCACTCTGACAGATATTATTGTGACAAAAGTTGTCTGATTTATTGCTTAAACAAACCAGAAGACAAATAATTGTGTATGAGTTAATGAAAGATATGAACTAA
>XM_010378163.2
CGACTCACCTCCTTTTAAAGATTCTCTTAGCCACGTTGACTGCACGGgaaaaacctttttaaaacattttttacgTTGCTTAAACCTACCATTTCGAAAGCATTCCGAAGGCTAAAGTGAGAAATAAGCCCAGGTTAGGGAGAGGAGAAACGAGTTTCACGTCCTGGCCTAGCACCGGGTTGGATTGTCGCTGGGACGGCAGTCAGGCATTTGGTGTGGTCGCCTAAGAGGTGGGTCTTTCGGCTGGGGCGCCGGGAAACCCCGTGGGCCTGCGCGGCGTTCTTCCTTTTCGATCCGCCATCTGCGGTGGAGCCGccaccaaaatgcagattttcgTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGgaATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGtgctaagaaaaggaagaagaagtcTTACACCACTCCCAAGAAGAATaagcacaagagaaagaaggTTAAGCTGGCTGTCCTGAAATACTATAAGGTGGATGAGAATGGCAAAATTAGTCGCCTTCGTCGAGAGTGCCCGTCTGATGAATGTGGTGCTGGGGTGTTTATGGCAAGCCACTTTGACAGACATTATTGTGGCAAATGTTGTCTGACTTACTGCTTCAACAAGCCAGAAGACAAGTAACTGTATGAGTTAATAAAAGACACGAACTAACA

Publications

PMID - Link Title