Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SMARCE1P6
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Rhinopithecus roxellana
Coordinates chr17:68085787-68086061  UCSC
Strand +
Parental Sequence XM_010388513.2
Parental seq. overlap 249 bp
Parental seq. overlap (%) 16.8%
Genomic Region Intergenic
Retrocopy Summary SMARCE1P6, located on chr17:68085787-68086061, is a retrocopy of the parental gene SMARCE1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SMARCE1
Full Name N/A
Also known as SMARCE1
Coordinate chr19:15731509-15751354
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SMARCE1P6
Chimpanzee Pan troglodytes SMARCE1P1
Bonobo Pan paniscus SMARCE1P1
Gorilla Gorilla gorilla SMARCE1P1
Orangutan Pongo abelii SMARCE1P1
Gibbon Nomascus leucogenys SMARCE1P5
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SMARCE1P6
GCAAAGGTGAGGAAAAGAAAGACGACAAGAACCTTCCAATGGAGACAGAGGAGACACACTCTGAAGAAGAGCTGACAGAACAGTGAAGAAGGCACGTCTACTCCTGAGGACAAGGAGAGTAGGTAGGAGGGGTCGATCGTATGGCAGAGAAGGAACCAGTGATAATAACACTGGCTTGACAGCCAACAGTGGAGGAGCCACCAACAGATCCCATaccaagaaatgagaaaaaagaataaatgttgcCGTGTTTTATGTgttctaaatact
>XM_010388513.2
TGCGgcccggaaaaaaaaaaattaagaagagtgTGGAAAGTGCGAGTGCGGAAGCTCCGGACGCGAGGGGCGGGGCGTGCGCGGGACAAAGGGAAGCGAAGCCGGAGCTGCGGGCGCTTTTTCTGCCCGCGGtgtctCAGATTCATTCTTAAGGAACTGAGAACTTAATCTTCCAAAATGTCAAAAAGACCATCTTatgccccacctcccaccccagctcctgcaacaCAAATGCCCAGCACACCAGGGTTTGTGGGATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCCGGGCACCAACAGCCGGGTCACGGCATCCTCTGGTATTACGATTCCAAAACCCCCAAAGCCACCAGATAAGCCGCTGATGCCCTACATGAGGTACAGCAGAAAGgtcTGGGACCAAGTAAAGGCTTCCAACCCTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCTCACTGATGAAGAAAAACAAGAGTATTTAAACGAATACGAAGCAGAAAAGatagagTACAATGAATCTATGAAGGCCTATCATAATTCCCCCGCGTACCTTGCTTACATAAATGCAAAAAGTCGTGCAGAAGCTGCTTTAGAGGAAGAAAGTCGACAGAGACAGTCTCgcatggagaaaggggaaccgtACATGAGCATTCAACCTGCTGAAGATCCagatgATTATGATGATGGCTTTTCAATGAAGCATACAGCCACTGCCCGTTTCCAGAGAAACCACCGCCTCATCAGTGAAATTCTTAGTGAGAGTGTGGTGCCAGACGTTCGGTCAGTTGTCACAACAGCTAGAATGCAGGTCCTCAAACGGCAGGTCCAGTCCTTAATGGTTCATCAGCGAAAACTAGAAGCTGAACTTCTTCAAATAGAGGAACGACaccaggagaagaagaggaaattcCTGGAAAGCACAGATTCATTTAACAATGAACTTAAAAGGTTGTGCGGTCTGAAAGTAGAAGTGGATATGGAGAAAATTGCAGCTGAGATTGCACAGGCAGAGGAACAGGCCCGCAAAAggcaggaggaaagggagaaggaggcCGCAGAGCAAGCTGAGCGCAGTCAGAGCAGCATCGTTCCTGAGGAAGAACAAGCAACCAACAAAGGCGAGGAGAAGAAAGACGATGAGAACATTCCAATGGAGACAGAGGAGACACACCTTGAAGAAACGACAGAGAGCCAACAGAACGGTGAAGAAGGCACATCTACTCCTGAGGACAAGGAGAGTGGGCAGGAGGGGGTCGACAGTATGGCAGAGGAAGGAACCAGTGATAGTAACACTGGCTCGGAGAGCAACAGTGCAACAGTGGAGGAGCCACCAACAGATCCCATaccagaagatgagaaaaaagaataaatgttgccttgttttatgtgttctaaatacttttttaaatgaaaaaatgttttttggttttaatgGT

Publications

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