Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NUDT4P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chrX:49762948-49763412  UCSC
Strand +
Parental Sequence XM_002752889.5
Parental seq. overlap 379 bp
Parental seq. overlap (%) 10.6%
Genomic Region Intergenic
Retrocopy Summary NUDT4P1, located on chrX:49762948-49763412, is a retrocopy of the parental gene NUDT4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NUDT4
Full Name N/A
Also known as -
Coordinate chr9:94014075-94037710
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NUDT4P3
Chimpanzee Pan troglodytes NUDT4P1
Bonobo Pan paniscus NUDT4P1
Gorilla Gorilla gorilla NUDT4P1
Orangutan Pongo abelii NUDT4P1
Green monkey Chlorocebus sabaeus NUDT4P1
Crab-eating macaque Macaca fascicularis NUDT4P1
Rhesus Macaca mulatta NUDT4P1
Baboon Papio anubis NUDT4P1
Pig Sus scrofa NUDT4P2
Cow Bos taurus LOC531462P2
Dolphin Tursiops truncatus NUDT4P2
Horse Equus caballus NUDT4P3
Pale spear-nosed bat Phyllostomus discolor NUDT4P1
Greater horseshoe bat Rhinolophus ferrumequinum NUDT4P1
Egyptian rousette Rousettus aegyptiacus NUDT4P1
Sloth Choloepus didactylus NUDT4P2
Gibbon Nomascus leucogenys Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NUDT4P1
GGATGAAGTGCAAGCCCAACCAGACGCGTACCTACGACCCGGAGGGGTTCAAGAAGCGGGCGGCGTGCCTGTGCTTCCGGAGCGAACGCGAGGACGAGGTGCTGTTAGTGAGTAGCAGTCGGTACCCGGACCGCTGGATCGTGCCGGGCGGGGGCATGGAGCCCGAGGAGGAGCCGGGCGGTGCGGCGGTCCGAGAGGTGTACGAAGAGGCGGGAGTCAAGGGGAAGTTAGGCCGGCTCCTGGGCGTCTTCGAACAGAACCAGGATCGCAAGCACAGAACGTACGTGTATGTACTGACTGTCACGGAGCTGCTGGAGGATTGGGAAGATTCGGTTAACATTGGCAGGAAGCGAGAGTGGTTCAAAGTCGAAGATGCCATCAAGGTTCTCCAGTGCCACAAGCCCGTGCACGCCGAATATCTGGAGAAACTGAAGCTGGGCGGCTCCCCAACCAATGGAAACTCCA
>XM_002752889.5
GGGGCGCGTGCGGGTTCCACTTAAATACGAGCGGAGGGGGCGGCGCGCGGTCGCCGCGGCGCTGCTACTCGGTGAGAGGGGATATTCCTAATTGTCTCCGCGTGGCGCCAGCCTCGAGCCGCCCTTCCCTTGGCGGCTGCGGCCGGAGGGAGCGGAGTCGAGCGGGAGGCGAGCTCCATGGAGAGCGGCGGACGCCCTTGCAGAGGCGGCGCCTTCATCTCGACACCTGGGCTCCAGTGACCCGCGCTCGCGCCCCGTCCCGCCCGCGTCAGTGCGGCCGCCCGCCCCGGGACTGACCGGCCTCGCCGCGCGTCCCTTACCGACCAGCGCGCCCAGCTCCCCTGCGCCCGACTAACCCTCGCCCCCACTTCCCGGCGGGGTGGCGGCGCCCGGGTCCTCGCGGCGGCGGCCGgagcagcagcggcagcaggaGCCCGCCTCTATGATGAAGTTCAAGCCCAACCAGACGCGGACCTACGACCGCGAGGGCTTCAAGAAGCGGGCGGCGTGCCTGTGCTTCCGGAGCGAGCAGGAGGACGAGGTGCTGCTGGTGAGTAGCAGCCGGTACCCAGACCAGTGGATTGTCCCAGGAGGAGGAATGGAGCCTGAGGAAGAACCTGGCGGTGCTGCTGTGAGGGAAGTTTATGAAGAGgCTGGAGTCAAAGGAAAACTAGGCAGACTTCTGGGCATATTTGAGCAGAACCAAGACCGAAAGCACAGAACATATGTTTATGTTCTAACAGTCACTGAAATATTAGAAGATTGGGAGGATTCTGTTAATATAGgaaggaagagagagtggTTCAAAGTAGAAGATGCAATCAAAGTTCTCCAGTGTCATAAACCTGTACATGCAGAGTATCTGGAAAAGCTAAAGCTGGGTTGTTCCCCAGCCAATGGAAATTCCACGGTCCCTTCCCTTCCAGATAATAATGCCTTGTTTGTAACCACGGCACAGACCTCTGGGTTGCCATCTAGTGTAAGATAGAGAGAACTGAGAAGGCCTCTCCCACTGTGTGGTCTCATAGGGAGaggcttctttcttttcctcgTCAAACATCTGAATGACGCTTGCAAACTGTCTGAATTTGCCATGCAAGGTTTTCAAACAATTTGCATGCTTTTCAGatgctttcaaatcttttttaaaaaatagtgtaaaatattttaataagccaAAGCCatgtggaattttttttagaTGCCTTAACTGTGCCACACCCCGCAACCCCCTATATTATTTTGGTTGTCTATTTCTCACAgcatatttttaggtttttgtccATTGACATCAGTCTGTGGTTTGTTTTGTCATCAGATTACTTGTGGTATTTATACTTCCCCCAAAAGTTGTTTTCTCATTCACAGCATTAGCATATTCAGCAAATCCATCTGTCCTGGCAATGAAAAATATTGGTAGTAAAGAAATCCATTCACCCCAAAACTTGTTTTATAGGATTACAAATTTAATTCAGATTTTCCAGATTTGGCCTACTTCTGTATGATCCAATAATTATTTTGTCAAAGGGCTTAATTTGCCATTTTTGGAGATTTGTCGACTTCATTTGTCTGAATTTTCACAACCGGTATTATGTCACTAGCTATCTGATATGGCTGTTTCCCTTATAACTCAATAGTACCTTAACACAAAGTATAACTCTATAGAGTTGGTGAATATTTTAGGGAAATATTAGCAAAATGCATGTAGTAAAGACATCATGAAAATTGTATTCATGGAATTTGATTTGCATGCTCAGTTGCCAGTTCCCATTATCGATACCCTTTACACAGAGTATCTTAGAACCATATTTTCTTCAATATTAATTGCTCTTAAAATGTATTCTCAGTTATTTAATCTAGTGGCCCCCCATAGGAGTGGAGTCTTGAAATTTAACTTTAAATGCCAGTCAGTGATGATTGCATCACAGTTGAGTAAAATGGCCATCCTGTTCAGCTGTTAGAGACTGAAGATTGTTAGGGCACCTTAGAATGACTCATCTTTTCTAGGTTGTCAACAGGTATTATTTGTCACATAGCATCGAGACACTAGAACATAACTGAACTAAGAATTAGATCTTTTACTTTATACTCACTTAAAACCAAGAATCCCACCTGAAACACATAGGTACCTTACCTGAAACTCTGCACTTCCCCAACCAGGGCAGAAATCAGGTGGGAGAAGCTTGATTAAGATGAGGGGTGGGGGAAAGTAAAAGATCATTTTTTATATAGACTTCAGTCCTTTGTAAATATTGTAACTGAATatagagtagaaaaaagtatAGTTAAAACATTTGTTGTACAaattaacctttaaaaatataattactgcTAAAAATAGAGCGCTGTTACACTTCAGGAAAATTGGTGCCGTTCTGAAAATGAGATCTTGTGCCATAAATACAGCTAAACTAAATATAAATGTTCACAAATTAATGCTGTCAAAGGAATGAGTAAAGCAGAAAAACTTTTAACCAGCGACATTTCATTCTAAAGTACGTAGTGTGATCAAACATGATCgtccagaatttttatattttttctttgtatagagGTTACATATTCTGGGtgttcttttataaagaaaacattttaaatcccACAAATTGACACTTTCTATCTTCAATGGACTAAGATTTTTTTGGTCAGTAATCTCTGAAATTTCCTTAAATTATATACTTAACATAGCAGAGAAACTGGATTGTTTTTGTATATAAGACTGCTTCCACCTGAAATGCTGCCATAAGTAATGGGGGGTGGGGGCGTGCATATCTTGTACATGATATTCTTAGAGGTAATAAGGTAATAATGCATGAACTTATTTTATAAACTCTTGGACTATGTATTTGACATGTAAAATATGTACAGTATTAATGTCAGCCATCTCTTTAAAGTTAGCCTATAAATATTGTTGTATAATTTTCTTTGGTCAGAAACATTTGGACTAAATAGTGACACTCAGACAGGATTTTCAGTGCCATTTAGCAAACCGTCTTTAGTCTATGCAACTAGCAAAAATCTGCATAATGCAACAATACAATTTTCACACTTTAAATTTTACACGAGGGGTTCTTCACGATTCTTCTGGAACCCAGTCTAGCAAAATTAGAGGAAAGGTCCTAGGaacatttatttctgttaaatAGTTAACTCTACTGAATATAACAAATATTGTCTACTATCTCAATCCTCCAAAGTTTGCAGAGTGTTGGGACTgtcatttgtgggttttttttttttttttttttgatggggtagTTGAATATAATTGGGCAGCTCAATGTTTCAGTTCCATGTGCCTcccaaacaaaaaacagaaaagtagttTTTGTGAATTGACTTGCAGACAAACTGTCCTGCATGATGTTATTTTCTAAACAGATGACATTTTCCAGCCAGGCACATGCCATCCAATTTTCTGTCATTCACACTGTTATATATATGATGCAGCAGAACTGAAGGGGAAAAATGATTGTTGTATACACTGAATTGCTTTGCATGGTCTCATTGAGATACTTGGTGTAAGAATCTTGacttttttatatttggaaacatcaaataaaaatggaaaaaatggtcatggcctt

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