Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name NUDT4P3
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:51332964-51333423  UCSC
Coordinates (T2T) chrX:50604248-50604707  UCSC
Coordinates (hg19) chrX:51075816-51076275  UCSC
Strand +
Parental Sequence NM_199040.4
Parental seq. overlap 379 bp
Parental seq. overlap (%) 3.9%
Genomic Region Intergenic
Retrocopy Summary NUDT4P3, located on chrX:51332964-51333423, is a retrocopy of the parental gene NUDT4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NUDT4
Full Name nudix hydrolase 4
Also known as DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B
Coordinate chr12:93377925-93408146
Strand +
Gene summary The protein encoded by this gene regulates the turnover of diphosphoinositol polyphosphates. The turnover of these high-energy diphosphoinositol polyphosphates represents a molecular switching activity with important regulatory consequences. Molecular switching by diphosphoinositol polyphosphates may contribute to regulating intracellular trafficking. Several alternatively spliced transcript variants have been described, but the full-length nature of some variants has not been determined. Isoforms DIPP2alpha and DIPP2beta are distinguishable from each other solely by DIPP2beta possessing one additional amino acid due to intron boundary skidding in alternate splicing. [provided by RefSeq, Jul 2008]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NUDT4P1
Bonobo Pan paniscus NUDT4P1
Gorilla Gorilla gorilla NUDT4P1
Orangutan Pongo abelii NUDT4P1
Green monkey Chlorocebus sabaeus NUDT4P1
Crab-eating macaque Macaca fascicularis NUDT4P1
Rhesus Macaca mulatta NUDT4P1
Baboon Papio anubis NUDT4P1
Golden snub-nosed monkey Rhinopithecus roxellana NUDT4P1
Marmoset Callithrix jacchus NUDT4P1
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NUDT4P3
GGATGAAGTGCAAACCCAACCAGACACGGACCTACGACCCCGAGGGGTTCAAGAAGCGGGCGGCGTGCCTGTGCTTCCGGAGCGAGCGCGAGGACGAGGTCCTGTTAGTGAGTAGCAGCCGGTACCCGGACCGCTGGATCGTGCCGGGCGGGGGCATGGAGCCCGAGGAGGAGCCGGGCGGTGCGGCGGTCCGAGAGGTGTACGAAGAGGCGGGAGTCAAGGGGAAGTTAGGCCGGCTCCTGGGCGTCTTCGAACAGAACCAGGACCCCAAGCACAGAACGTACGTGTATGTACTGACTGTCACGGAGCTGCTGGAGGATTGGGAAGATTCGGTTAGCATTGGGAGGAAGCGAGAGTGGTTCAAAGTCGAAGATGCCATCAAGGTTCTCCAGTGCCACAAGCCCGTGCACGCCGAATATCTGGAGAAACTAAAGCTGGGCGGTTCCCCAACCAATGGAAA
>NM_199040.4
GGTCGCCGCGGTGCTGCTGCTCAGTGGGAGCGGGTCTTCGCAACTGTCTCCGCGTGGCGCGCGCCTCTAGCCGCCCTTCCCCTGGCGGCTACGGCCGGAGGGAGCGGAGGCGAGCGGGAGTCGGGCTCCATGGAGAGCGGCGGACAACTGGGCAGAGGCGGAGCTTTCATCTCGGCACCCTGGTTCCAGTGACCCGCGCTAGCGTCCCGTCCCGCCCGCGTCGGAGCGGCCGCCGGCCCCGGGACTGACCGGCCTCGCCGCACCTCCCGCACCGACTAGCGCTCCCGGGCGCTCCTGCGCCCGACTCGCCCTCGCCCCCACTCCCcggcggggtggcggcggccgggcccccacggcggcggccggagcagcagcagcagcagcaggagcCCGCCTCTATGATGAAGTTCAAGCCCAACCAGACGCGGACCTACGACCGCGAGGGCTTCAAGAAGCGGGCGGCGTGCCTGTGCTTCCGGAGCGAGCAGGAGGACGAGGTGCTGCTGGTGAGTAGCAGCCGGTACCCAGACCAGTGGATTGTCCCAGGAGGAGGAATGGAACCCGAGGAGGAACCTGGCGGTGCTGCCGTGAGGGAAGTTTATGAGGAGGCTGGAGTCAAAGGAAAACTAGGCAGACTTCTGGGCATATTTGAGCAGAACCAAGACCGAAAGCACAGAACATATGTTTATGTTCTAACAGTCACTGAAATATTAGAAGATTGGGAAGATTCTGTTAATATTGGAAGGAAGAGAGAGTGGTTCAAAGTAGAAGATGCTATCAAAGTTCTCCAGTGTCATAAACCTGTACATGCAGAGTATCTGGAAAAGCTAAAGCTGGGTTGTTCCCCAGCCAATGGAAATTCTACAGTCCCTTCCCTTCCGGATAATAATGCCTTGTTTGTAACCGCTGCACAGACCTCTGGGTTGCCATCTAGTGTAAGATAGAGAGAACTGGGTAGGCCTCTCCCACCATGTGCAGTCTCATGGGGAGAGGCTTCTTTCGTTTCCTCGTCAAACATCTGATTGACGCTTGCAAACTGTCTGAATTTGCCATGCAAGGTTTTCAAACAATTTGCATGTTTTTCAGATGCTTTCAAATCTTTTTTTAAAAAAATAGTGTAAAATATTTTAATAAGCCAAAGCCATGTGGAATTTTTGTTTAGATGCCTTAACTGTGCCACACCCCACAACCCCCTATATTATTTTGGTTGTCTATTTCTCACAGCATATTTTCAGTTTTTTGTCCATTTGACATCAGTCTGTGGTTTATTTTGTCATCAGATTACTTGTGGGTATACCTACCCCAAAATTGTTTTCTCATTCACAGCATTAGCATATTCAGCAAATCCATCTGTGGTGGGAATTAAAAATATTATTGGTATTAAAGAAATCCATTCACCCCAAAACTTGTTTTACAGGATTACAATTTTAATTCAAAATTTCCAGATTTGGGCTATTTCTGTATGATCCAATAACTTATTTTGTCACAGGGCTTAATTTGCCATTTTTGGGGATTTGTCGACTCATTTTGTCTGAATTTTCACAACTGGTATTATGTCACTAGCTACCTGATACGGCTATTTCCCTTATAACTCAATAGTACCTTAACACAAAGTATAACTCTGTAGAGTTGGTGAATATTTTAGGGAAATATTAGCAAAATGCATGTAGTAAAGACATCTTATGAAAACTGTATTCATGGAATTTGATTTAGCATGCTCAGTTGCCAGTTCCCATTATCGATACTCTTTCTTTGCAGAATACCTTAGAACCGTTATTTCCCTCAGTGTAGATTGCTCTTAAAATGTATTCAGTTATTTAGTGGCCCCCACAGGAGTGGAGTCTTGAAATCTAATTCTAAATGCCAGTCAGTGATGATCGCATCACAGTTGAGTGAAATGGCCTTCCTGTTCAGCTGTTAGAGACTGAAGATTGTTAGGGCACCTTAGAATGTCTCATCTTTTCTAGGTTGTCAACAGGTACTATTTGTCACATAACTAACTTTCGAGGCACTGGAACATACCTGAACTAAGAATTAAATCTTTTACTTTATACTCACTTAAAATCAAGAATCCCATCTAAAACACATAGGTACCTTATCTGAAACTCTTGCACTTCCCCAACCAGGGCAGAAATGAGGTGGGAGAAGTTTGACTAAAATGAGGGATGGGGGAAAGTAAAAGATGtttttttttttttgagactcgctttgtcacccaggctggagtgcaatggcacaatctcaactcaccgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagttgggattacaggcgcctgcctccatgcctggctaattttgtatttttagtagagacagggtttcttcatgttggtcaggctggtctcaaactcctaacctcgtgatccgcctgcctcgacctcccaaagtgctgggattacaggcatgagccaccatgcccagccAAAGATCATTTTTTTATATAGACTTCAGCCCTTTGTAAATATTGTAACTGGGGAGTATAGAGTAGAAAAAAAGTATAGTTAAAACATTTGTTCTACAAATTAACCTTTAAAAATATAATTACTGCTAAAAATAGAGTGCTGTTACACTTAAGGAAAATTAGTGCCATTTTGGAAATGAGATCTTGTGCCATAAATACAGCTGAACTGAATATAAATGTTCACAAATTAATGCTGTCAAAGGAATGAGTAAAGCAGAAAAACTTTTAACCAGCAACATTTCAAGTACGTAGTGTGATCAAACATGATCATCCAGAATTTTTATATTTTTTTCTTTGTACAGAGGTTACATATTCTGGGTGTTCTTTTATAAAGGAAACATTTTAAATCCCACAAATTGACACTTTCTATCTTCAATGGACTAAGATTTTTTTGGTCAGTAATCTCTGAAATTTCCTTAAATTATATACTTAACATAGCAGAGAAACTGGATTGTTTTTGTATATAAGACTGCTTCCACCTGAAATGCTGTCATAAGTACTGGGGGGGTGGGGGAGTGCCCATCTTGTACATGATATTCTTAGAGGTAATAAGGTAATGATGCATGAATTTATTTTATAAACTCTTGGACTATGTATTTGACATGTAAAATATGTACAGTATTAACGTCAACCATCTCTTTAAAGTTAGCCTATAAATATTGTTGTATAATTTTCTTTGGTCAGAAACACTTGGACTGAATAGTGACACTCGGTAAGGATTTTCAGTGCCATTTAGCAAAACGTCTTTAGTCTATGCAACTAGCAAAAATCTGCATAATGCAACAACACAGTTTTCACACTTCAAATTTTACATGAGGGGTTCTTCACGATTCTCCTGGAACCCAGTCTAGCAAAATGAGAGGAAAGGCCCTAGGGAGATTTATTTCTGTTAAATAGTTAACTCTGCTGAGTATGACAAATAGTGTCTACTATCTCAACCCTCCAAAATTTGCAGAGTGTTGGGACTGTCATTTGTGAttttttttttttttttttGGTGGGGTAGTTGAATAAAATTGGGCAGCTAAATTTTTCAGTTCCATGTGCCTCCCAAATAAAAAACAGAAAATAAGTAGTTTTTGTGAATTGACTTGCAGACAAAGTAGAAACTGTGCTGCATGATGTTATTTTGTAAACAGATGACATTTTCTGACCAGGCACATGCCATCCAATTTTCTGTCAATCACACTGTTGTATAAAGCAGCAGAACTGAAGGGGAAAAATGATTGTTGTATACACTGAATTGCTTTGCATGGTCTCATTTGAGATAATTGATGTAAGAATCCTGACTTTTTTATATTTGGAAACATCAAATAAAAATGGAAAAAATGATCATGGCTTTAAAAAAAAAACAAAAACACACACACATGAACTCAGATTTGCAAACCAGGTTTCTGAAACTTTGGGTAAGGTGTATGCTTTTAACTTTGAAATGTATAAACACCCAGCGGAAACGTATACCTTTCAGTGCATAGTGCATTGTGTGCTTACCCTGGGTTGTTTAAACTTGTGTTCAAATATTCCCCCTCCAAGTGAAAGCCTGTCGGGAATTCCACAGTAACACCTTTACTGTTCTCCCATTGATGATCATATACGTTACCTCTTCCTAGCGGTACATTTGTATGATCCTTACTACTGGAATTACCGGGTTAAAAGGAAATGCTTACCACTAAGATGTCAGTATTCTCCTCATGGATATTTTCAGTCTCAATGTTGCCAGTCTAATAGTATAGTATGTGGTTGCTTTACTGCTGTTCTCCCCACCCCCGTGGAGTTGTGTCATTATTTTAATGAATGTGAGCTCTTGACTTACTCTAGAATTCTAATACAGATACTTTCTGCACTAGTATCACTTTTATTATTGCAGTTCCATTTAAAAGCATAACTGGCTAAGTCACCGCCCCACCCGCCGCATTACATTTCCTAAAACATACTGCTGCCAAAGACCAACTGTAGAATCCTTAAGTCCTGTTCAAGTGTCACTTCATTTTTTATTAGGGGTTTCTTAGTTGGAGGGCATGAGAAACTTGGCCCTTTCCAATGTTGTCTTCACATTGGAGTATAAGAATTCTCTATAGGACTCTTTAAtttttttttttttttggtagagatggggtcttgctgtgttgcccaggctggtctcaaactcctaggcttaagcagtcctccagcctcagccttctcaaagtgctaggatgattggcatgagccacctcgtctggccTGCAGGTCTTTTTAAGCATTTGCTGTTCAAtaataagcatcttctttatgcctagtatttgtgataagagcacaaaacaattttctaatctcaaagagcttatattctagtggggtagagataagtgaTTTATCTTGGTGTAGTTTTGGCttttttgtttgtttttttgagacagcatctcacactgtcgcccaggctggagtgcagtggtgcaatctcagcttactgtaacctccgcctgccaggttcaagcgattctcctgcctcatcctcccgaggagctgggatcacaggcgcctgccaccacgcccggctaatttttttgtatttttagtagagacggggtttcaccatattggccaggctggtctcaaactcctgacctcgtgatccgcctgcctcggcctccctaagtgctgggattatgggcgtgaaccaccgcacctggccTATCTTGGTGTTTTTACATCCTTCAGTATTTTTCAAGGTTTTACAGCTTTTTTATCTATAGACTTATACCATCTTCAAAAGCAATACAATTTTATTTGTAGACGTGATTTCCCCCACCAAATGCACATTTTATGGAGCTCTAGGACAAAAGTCAGGATGAAAAGTAATCTATCGCTGGTGCTACTTTAATACCTTCCTGACTGGTGCCACTGGCTAAATTCTAGCAGTACGATGAGAGGGCCATTAAGGCCTATCTTAGCAAGCAAGACATTATAGCAAAGACCTAAACACTCAAAGGTTCAACGTCTTCTAGCCAGGGAACTATTCTCTAATTCTTCCACCTTGATATGATTTCAGCAAATTCTGATAACCCGGTATTACTCTTAATGCATTTTTGTAACATTTGACAAACATCTCCCAATATGTAGACTCCCACTCTCCTGATGCTAATCAGTATCAGACAATGGAAGTAAATTTTCCTGCTTTTCTCAACTTTTCCTCAAATTCATGTTAGTGAAGTACTTTCATTTGGCCATCATTATTTATCAACCTTAAGAAACATGCCTATTGACGAAGTAAATATACTAGGAATTCAACGTATCTACGGGAATGTGGACAAAGACATATACCAAGACAAGGCACTAGAGTGAAAAGCCATTAAAATAAAATGCTCAGCAGCAAAGGATTTGTAATGGTTAACTTGCAATATATCCATATGGTGTAATATTACAGTCATTAGAAATGACATTTGCGTAAGGATCTgagtggaaactgatacagcctgtcggagagctactgagtagtattttatcacagctgcatacataccctttcacccaacagttccactcctgggagtctagtcaacaaatggacaagttgcacaaccaagctatggtcaaatatgtgtgttgtaggattTATGAAACTGGTACCAATTTAATATTCAAATGTGATTAAGTCATGGCAATCTATTTACTGGATACTTTGTGGTTACCAAAGAGCTATGTGCTGCCACAGGGAGTCCTTTCAATAGTGATTGAAAAAGGCAGAACACTACTAGACAGAACTACCTGTTTTATGCATGTATTGGCATACACTGAAAAAGCTTAGTCACTTAAAATGAGGTTGTACAGATTGTAGATTTTGTTTTTAAACGCCTGTATGGTTTAAAAAATGTTTTGGGAAATAGACATGAGcagggcagagaactacaacctacaggccaaaccccaccccactgcctgtttgtacggccaacaagtttaaaatttttttaatgttttAGGTTTTTTtttttttaaaaaaaatactatgcccatttgtttacaaatcgtctgtgggtgctttctcactacaatggcagaattcagtagttgagacagacctatggtccacaaaggccgaaatatttactgtttTAGGAGAAAAAAACAACATGAATTGTAATAACTTGGACTTACTTGGTTGCTCAGTCCTGATGTGTCCTGTTAAAACCTAAGAGAAACAGCACCAAGTTCAATCTAGTGCAATCAGCCTATCACATCTAAGCTGCTTTTGCCAGATCTGATATCTACTCCCGACCTTAAGCCAGGAGACTTTGTAAACTTACTAGGTTATAATAAAACTTAAGAACTATCGATATTTACTAATCTACATCATGGAACTATTTCAAAAGCAGTCATATGGTAAGATGGATCAGGAGTCTTTAAAAATAAAACTGAGAAAGAAAAATCATGTGATCAATTCAGTAGTAGAGACAGAGGTTGGTATCAAGTCTATGTTCATACACTTACCAGTGCCACCCAGCAGGGCCATACAAGACACATGAAATGAGATCAGCTCAAGGGTGACAAGATGAAACTGGGAGAGGGCCGGGGAGACCCGAACTCTTAATATTGGATTCCACACAAGAGGAAAAATTTTAGTCCAGCTCCCAGCATGGCAGCTAATGGCAAGTTAGTACCATAAAGCCAACTCTTGGAATATACCTGACTTCCACGATAAAATGGAGATGAGTGCAGGGGTGAGTGTATAGTTAAGAAAACAAACAATATATTACTAGTCCAGGTGGTAGATGACAGATTTTTATTATTTACACTTCTCTCAAATTATTACATTCAGCATGTTTTGCTTTTTATGTTATTTAAAGTATAAACCCTCATATAATTCCCTAAGATGGGTGGCATGCCAAGTAGCTAAATGAAATATCATCCCAGCCCAAAAGTACTTATTCGAATGAAATATTACATTTTTCTTAAATAAAGCAATAAATTAGGTACCCTATTATCATGGTATTTTCTTTTTTGGCCAGCTTTTCTAGATAAGGTTGTATTGCTACTGCAACTAACAAAAAAGATGTGGCAGggctgggcacggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaggagatggagaccatcctggcccaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccaggtgtggtggcaggtgtctgtagtcccagctcctcaggaggctgaggcaggagaatcgcttgaacgcgggaggcagaacctgcagtgagccaagatcatgccacagcactccagcctaaactacagagctagaaagtggctagagcagccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGTTCCTGAACCATTCAACAGAAAAATGAGGCCTATTCCTATCATTTCCTCGATCCAATTTAGTTCCACTTAGGTCACTGTGTTTATAATGTCTTTTAGGACAGATTTCCTTCCCCATTCTCCATCAAACAACCATAGCACCTGTGACTTTTATCTGTTGGTTTGTATTTAATCTTATTTTTAAGTGCTTCTTTGAAATTGTTTTACAAGTACATTCTTGGTCTAGAGTAAGGTTCTATATagttggccctccatatccatgggttccacttccgtggattcaaacaaccagacaaaatattccaaaaaacattgtgtctgtagtcaacatgtatatttttgtcattattccttaaacaatagtgtaactatttacatagcacttacattataataggtattataagtaatctaaatattaacataagcgggaggatttgtgtagattgtatgcatatacaacatcattttattccagagacttgagcatctgcgaatttggatatccaaaggaagtcctagaaccagttcccgacaaataccaagagatgactTTACTTTAGACCTAAGATCTTGCTAGACAGCCTTTGAGAGGATGAAGGATAACTAGAGCAGAAGCAAATCGCAGCGAAGTAGACTACAACAATCAAGTCAAAAAACATAAAGCTCCTATCAACACCTCAAGATTTTAGAAAAGCCTCTTAACGGGCAAttttcttttaaataaagactgggtcccactatgttagccaggctggtcacaaactcctggactcaagtgatcctcctgccttggcctcctaaagtgctgggattacaggcatgagccactgtgcccggccTGGGCAGTCGATTTTCAGGAAGCCACTTAATGTTcagattcttttcttctctcccaggactttgcagatgctgctgttccctctgcctggagatgttcatcTGGCCTGAATCCAAAAGTCTGTCCAAGTTACTTCTCTTTTCCATGACAGAGTTACAACTATTTGTCTGTCCCCCTTCCCCATTAGAGTATATGGTCCCCAAAGGAAAGCCCCATGCCATTCACTCACCACCTAATCATCCCCAACAACTAGTGGGCAAACATGAAACACTTTTGTTGAATAATGTGTTTCCTTTAGCCcagggattacaaagtcaaaggcttacaagggggaaggactagcaggtgtgctcggaggggactctagccaactggagagtaactggtgagaagacaatgacatgctcttagggtgtctgctactcagatcctctcagttaagtcccgtgcacaaaggtgggtcaggtctactgttgccagatcttcagatcattcaaaagttacccgaattctggattttcatgcaaatctcccaatttttaaaaatgttggcatcaaattcagaatgttttaaccagccacactgtgtgggccagggaaaacaggcccaaaggccaggtGAAGCTGCAGTTTTCAACTGCTGCCTTGGCCTCTCCCAGAGCCCCTTAAGTCCTAAGAAGGCTCAGTCAACACACTGGCACTCGTTTCATCCCACTGGTTGAGAAAGCAAGTCTTAGCAAAGTAATGGGGGAGTCTTACCAAAACTGCAAAGGAAAAAAATATGATACCATGAAATTAGAAATTCACTGCATTTGAAATGAAAATGACTTATTTCTGTACTTCTATAACTCACAAATTTAGCAGACATCATTTAGACATTTTTGTAGTGCAACAGATTTAAATCTGGAATTTCATGGTTTGTAAATCACTATGTGATACTAGCTATAACCATGAGCAATATTACGGGCAGTAAATGTTGATTTCTATTTCGTTTCTTGAA

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