Retrocopy Name | G3bp1P1 |
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Species | Rattus norvegicus | |
Coordinates | chr1:169495137-169497008 UCSC | |
Strand | + | |
Parental Sequence | NM_133565.1 | |
Parental seq. overlap | 1651 bp | |
Parental seq. overlap (%) | 25.1% | |
Genomic Region |
Intragenic (Trim30c) |
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Retrocopy Summary | G3bp1P1, located on chr1:169495137-169497008, is a retrocopy of the parental gene G3bp1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | G3bp1 |
Full Name | G3BP stress granule assembly factor 1 |
Also known as | G3bp|RGD1310666 |
Coordinate | chr10:40812858-40846252 |
Strand | + |
Gene summary | Predicted to enable helicase activity and mRNA binding activity. Predicted to be involved in several processes, including positive regulation of stress granule assembly; positive regulation of type I interferon production; and stress granule assembly. Predicted to act upstream of or within negative regulation of canonical Wnt signaling pathway. Predicted to be located in cytoplasmic stress granule. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol. Orthologous to human G3BP1 (G3BP stress granule assembly factor 1). [provided by Alliance of Genome Resources, Apr 2022] |
Species | Scientific Name | Retrocopy | |
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Human | Homo sapiens | Without Homology |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>G3bp1P1 |
GGAGGGACACCACCACCTCCTCCCATTCAGCAGCCCTATCCTCCGGCTCAGTTGTGTAGGTTGAATCCACCAAAGCAAAGGTTATGGAGAAGCCTAGTCCCCTGCTGTTCTGGTAGGAGTTTTTCTACAGTAGTACACCCTGCTGGACCAGGCCCAGGATATGCTGCACAGATTTTGTGAAAAGAACTCTTCCTATGTCCACAGGGGCTTGGATTCCAATTGGAAGCCAGAAGATGAAGTCTACAGGCAGACGGAAATCCACAGGGAAGTGATATCACAAATCTTTACCAACTGCCACACCAAGATCCGTCACGTGGACGGGGCGGTGGTCTAAGTGATGGGGCTACAGTCCAACCACTCCGCTCTGCAGAGGTTCATGCAGACCTTTGCCCTTGATCCTGAGGGCTCTTTTGCCAGCAAACTCTCTGTTCACAACGACATCTTCAGATACCGAGATGAGGTCTTCGGTGGCTTTGTCACAGACCCTCAAGAGGAATCTGAGGAAGAAGTAGAGGAACCTGAAGAAAGACAGCAGACACCAGAGGTGGTGCCTGGTGATTCTGGAGCTTTCTATGATCAGACTGTCAGCAATGACTTGGAGGAACATTCAGAGGAGCCCGCTGTGGAACTGGAACCAGAGCTGGAACCGGAACTGTGCCAGACATTCAAGAGGACATGCCTGAGCCTGCATTGGAAGAAGCTGCTCCTCAGGGTGTGCAGAAGAGCAAGTACTTCCCGGGCTCTGGAAGACATGGCTCCAGCACAGGAGGGCGTAAGGAATTTTCTGGGGCATCTGTGACGAGTAAGAGCCTTCCTCCCAGTGGGACTATTCCAGTTCCACATCACAACCCGGATCAGAATCTAAGCCTGACTCTCAGATCCCACCACAAAGGCCTAAGAGAAGTCAGAGTGTTCGAGAGTAGTTGATCAATATCCCTCCTCAGAGAGGACCCCGACCAATCTGTGAGGGGGGTGAGCCAGGAGATGTGGAACCTCAAAGGATGGTGAGGCACCCTGACAGTCACCAGCTATTGACAAGTCGGAACTGAAGGATTTTTTTCCCCAAAATTATGGGAATGTGGTGGAGCTGTGCATCCACAGTGGTGGGAAGTTGCTCAATTTCGGTTTTGTTGTGTTTGATGATTCTAAACCTGTTCTGAAGGTCCTTAATAATAAGCCCGTCATGTTCCGAGGCACAGTCAGCTTGAATGTGGATAAGAAGACTCGAGCTGCCAGGGAAGGCAACCGCAGGGATAACTGCCTTTGGGGGCCTGGAGGCTCCGGTGGTGAGCCAAGTGGTGGGATGAGAGGCTGTCCGGGTGGAGGCATGGTGCAGAAACCAGTGTTTGCCGTGGGCAGGGGGATTACAACTCCAAGGTAGTGAATTGCTTGGCTCAGCTCTCCAATTGCTTGGCTCAGATCTCCCCACAGCACACAGCCCCAGGTCCTGCAGAATGATGGATTCTTTCAATCAGCCTTTGGTGTCTCAGAGTAGTCTATTATAAACTGCTTGAGTTTGTATAATTTTAATTTCGTTTGTGTTCACGGTGTGGCTCCCAATCCCCTTTCCTCTCTTGACCTTTTAGTCCTTCATTCCCAGTTTACTTTAGGAGGAATACATTTGTAAAGAAGAAGAGGAAAGCCTGATCTTCCTGCTCACACTGCAGACACAGACTGGAGTTTCACGGCCATTCCCCAGAGAAACGTGACTCCGTTTCACTCACAATGGATGTTTCATTGTTGGGAGACACAGGATTTGAAAAACATTTTGGAAGCAGACAAAAATCATGACTCCTTTCTGGTGTGGAAAAATTGCCTTTTGGCAACTGCCACTGGGTCCCTGCAGGTGTGGCTAGCTGAATAAAAGGTGTT |
>NM_133565.1 |
CGCGGCATCGCGCGAGGGACGCCGCCACCTCCTCCCACGCAGCAGCCCTGTCCTCCCGCTCAGCCGCACAGGTTGAATCCACCAAAGCGATGGTTATGGAGAAGCCTAGTCCCCTGCTGGTCGGGCGGGAGTTTGTGCGACAGTACTACACCCTGCTGAACCAGGCCCCGGACATGCTGCACAGATTTTATGGCAAGAACTCTTCCTATGCCCACGGGGGCTTGGATTCCAACGGGAAGCCAGCAGATGCAGTCTACGGGCAGAAGGAAATCCACAGGAAAGTGATGTCACAAAACTTCACCAACTGCCACACCAAGATCCGCCACGTGGATGCTCACGCAACTCTGAATGACGGGGTGGTGGTCCAAGTGATGGGGCTGCTGTCCAACAACAACCAGGCTCTGCGGAGGTTCATGCAGACCTTTGTCCTTGCGCCTGAGGGCTCTGTTGCCAACAAATTCTATGTTCACAATGACATCTTCAGATACCAAGATGAGGTCTTCGGTGGCTTTGTCACAGAGCCTCAAGAGGAATCTGAGGAAGAAGTAGAGGAACCTGAAGAAAGACAGCAGTCACCAGAGGTGGTTGCTGATGACTCTGGAACTTTCTATGATCAGACTGTTAGCAATGACTTGGAGGAACATTTAGAGGAGCCTGTTGTGgaaccagaaccagagccggagccagagccggaaccggaaccTGTGTCCGACATTCAAGAGGACAAGCCTGAGCCTGCATTGGAAGAAGCCGCTCCTGAGGATGTGCAGAAGAGCGCCTCCCCGGCCCCGGCAGACGTGGCCCCAGCACAGGAGGACTTGAGGACATTTTCTTGGGCGTCTGTGACTAGTAAGAACCTTCCTCCCAGTGGGGCTGTTCCAGTGACAGGGACACCACCTCATGTGGTCAAAGTGCCAGCATCACAGCCCCGTCCAGAATCTAAGCCTGACTCTCAGATCCCACCACAAAGGCCTCAGAGAGATCAGAGAGCTCGAGAGCAGCGGATCAATATCCCTCCTCAGAGAGGACCCCGGCCAATTCGTGAGGCTGGTGAACCAGGAGATGTGGAACCCCGAAGGATGGTGAGGCACCCTGACAGTCACCAGCTCTTCATTGGGAACCTGCCACATGAGGTTGACAAGTCGGAACTGAAGGATTTTTTCCAAAGTTATGGGAATGTTGTGGAGCTGCGCATCAACAGTGGTGGGAAGTTACCCAACTTCGGTTTCGTTGTGTTTGATGACTCGGAACCAGTTCAGAAGGTCCTTAATAACAGGCCCATCATGTTCCGAGGTGCGGTTCGCCTGAATGTGGAAGAGAAGAAGACTCGAGCTGCCAGGGAAGGCGACCGCAGGGATAACCGCCTTCGGGGACCTGGAGGCCCCCGTGGTGGGCCGAGTGGTGGGATGAGAGGCCCTCCCCGTGGAGGCATGGTGCAGAAACCAGGCTTTGGCGTGGGCAGGGGGATTACAACTCCAAGGCAGTGAATTGCTTGGCTCAGATCTCCACACAGCACACAGCCCCGGCTCCTGCAGAATGGTGAATTCCTTCAACCAGCCTTTGGTGTCTTGGAGTAGTCTATTATAAACTGCTTGAGTTTGTACAATTTTAATTTCGCTTGTGTTCATGGTGTGTGCTCCCCAAACCCCTTTCCTCCCTTGACCTTTTAGTCCTTCATTCCCAGTTTTCCGGAATGATACTTTAGGAGGAATAGATTTGTAAAGACGAAGAGGAAAGACTGACCTTCCTGCTCACGCTGCATACACAGACTGGAGTCTCACGGCCATTCCCCAGAAGTGTCTCGGTTTCACTGACCACGGATGTTTCATTTGTTGGGAGACACAGGATTTGATAAACATTTTGGAAGCGGGAAAAATCAAGTCACAACTCCTTTCTGGTGTGGAAAAATTGCCTTTTGGCAACTGCCACTGGGTCCCTGCAGGTGTGGCTAACTGAATAAAAGGTGTTCTTTTGACATGTGATTACCAAACAATTCTAAACCTCCATTTTTACCATTGGATTTTTAAATTGTGATGTAGCCTGTCAATGTCTAGAACACAGCTAAAGACTTTTGTTGAACTGTTAGATTTTTTTGAGGTAGAGTTTTTCATGTTTTATTTGTATTTGTaaaaaaaaaaaaagaaaaaaaaagaaaaaagaaaaaaggacaaaaaaTTCCCACGAGAAAACAAACCCCAAATCTGATGACAAAACCAAGCAACACTGTGCCTTCTATTTATCGTTGACTCCGGCCCTGGCAACTGTTTAAAGGAAAGTAATAAAGATTCCAGAGTTGTTTTCAGATTCAGAGTATGTGGGGGAACTGCACAAGTTTTTTGATCACGTGTATGTGTCGTGTTAACATTGTTCTGCCTTATCCTAAATCACGCCTCAGACTGGGATGCTTTTGAGGAAAGGTGCTTCTGTGAGGCCTCTGACCTCAGTGGCTCTGTGCGCCACACTCTACTCTGCTGTCTGTCTGGGTTCCTGGTGGGCCATAAGAAGGATTTGGTTGAATATTGGACTTGGCTAATGTGCTCCAGGGTCTGCATTTTTTTTCTTTAAATCATAGCCATATGGTAAATTTTCTATTTTGTTACGGTTCTCTTTTACTGATGGACATGCAGTGGGTGTTTCTTGGAAAAAGGCCAATTTTTATTAAAATATTTCTGGAAGAAAACTTCATCTGGCAATGTAGACTGCTAAAACTCACTTTCCAGTGTTGTGTGTTGAGTGCTGTGTGTGACATTGGGTGAAGGTTTTGTCCGCACAAGCCTCCATGGACAAGTCATTAGTCTGAAGGCAACCAGAGTGTCTAACTTTTCCTAATGTTTGTGTGtatgtctatgtatatgtgtatgtctatgtatgtgtgtatgtatatgtatGTGGGAGTCTTCATACATGCGTGCACCACAGTATGCTTGTGGAAGTCAGGGCAACTTGGGATCTAGGCCTTATACTCCACTGTTTGAAATtggcccatgagccacaagcttctatgggctcctgtttgtgcctctcatcttgctgtaagggcacaaggatttcagacatgtgctgccatgcctgtcttccctgtggcttctgggaattagtcaggtcttcatacttacaCATAGTGCTCAGCCAGCTCGTCTGACTTTAGAGCTGTCACATATGTATGCTGGTTTTGTTAGGGTAGTTGGGATGAAAATGGTGTGAGGTTGTCAGGTTTGGTCTCAATACCTCACAGATCTAAATGTTGACAGCATGTTGTGAACTGAGGTAACCAAATCCCACGACTGGGGGTTCAGTTTAAGCACTTCATTTGAGGTGGTGACGATGCAGATGTGTGCAGCATGTACTTTGTAGTAAAGTGTATGGTTACAAGGACAACTGagccaggcttggtgactcatgatgataaccccagcactcaggaggcaaaagcatggtctgtgaagcaagttccaccaaggttgcatagtgtgactttcaagaaaCAAGGCAAAAGGGCAGCAAAGAAAAGTCCCAAGTGGCACACAATGGCACAGGCTTGCCTGTGTAGTCTCAGATCTCCGGTTCAAGGCTAGTCTGGCCCATATAATAGTCTCTTAAAAGTTTCAGTAACTTGGGTAAATCTAAAAATGATTTTCACAATTGAGTACTAAGACATGCATTTAGAAGTTTTTTCCTAGTCACCTGATTAGGTGATTGACATTTGCTGTACAGAGTAAGGTGTCATGGCAGCATCCCTCATTTCTCTGGAGACCAAGGGTATCAGAGTGATCTGGATTGATCTGAGAAAGAGCAACCTGTGGGTGGGTTGGGATATGAGAAGCCCATTCTCTTCTACCTCAGATAAGTGTGTAGCAGTACAACCGCGCGCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtAGGGATGTAGCAGTACCCCTATTGCTTGTGACTGGGGTTGGGGAACTGCTTCAGCCCTACCCTATTTCCCAGCAGTGGCACTGGGGATCAGAGTGTGCTTTGGAAGGGCATGGGTCTCAGCTTGGCAGCCCGTTTTGCACTGGAGAATCTGGATGCCAATGACACCACGTGAAGCCTAAACCTTGGAGCTTAAGAGGTGCTCATGGTTACAGAAAGCACAGGCTATTTCAGAAGTGGCTGCTGATGTCAGCCTTCTCATGTCAAGATTTGATCTGCAGGGAAGACTCAGGATGTCGTTCTTTGTTATTGAGCTTAACTAGGATCCGTGATGGGTATTTTAGCCAAGTGAGACTttatgtatgtgtacatgtctatgtggatgttggccacatgtgcaggtgcctcagaacacctatggccccttggagctggagttacaggtgagtgagccctcccacataggagctgggaatcgaacttaaagtcctggaagagcagcagggtactcttaggcatgagtctctgttcagaccTATTGGAAGTAAGTAACCAGACCTTGACCAGACCTTTCATTTGCTTTCCTTGTGAGGTGGCACTCCTGTGCTCTGCAGTCTCAGCTGCTGCTTTGGAACAGGGACAGTGACAGTTGGAGAGTTGCAATCAgggcctgtggcacacgcttaatcctggtgctcaggagactgaggtgaggattgtgaattcaaaaccagccttgattacaaagcaaagcccacttttgtttacagcaaaacaaGTGAGCCCACTTAGCTTTCATGTGTGCCTTGGATTATGGCACAGTAATAAAGGGAAGAGATGGTGGGAAGCAGTTGAGCGAACAGGGCTTTCAGGAGCAGGCGGGGCTTCGGGCAGTACCTACAGTATTGAGCCAGGAGCCCGGTTCCTGTGAGTGCCTGTGAGCTGGATGTCTAGGGTGGAATTTCCACCTCTCAGACCACTTGGGGTGCCATTCAGGACACAGTAGCGCCCTGCAAAGTTAGCTCACCAGTTGCCCTCTACATAGCTGCTCCCTGCCCACCTTTAGGGATGGATTTACTGTGTCAACAAGCTGGGTCTTGTGAGGTGTGAGGAAGGGAACAGGTGGTTCtgtgtgtgtctgtgtgtggaagccttgggcgttccacaggagccgtccaccatgtttttgcttgtttttgtttttttgtgacgtttcattgtgtattcatttctagctgttctggaacttgctacatagcttagcctcctattaactcagaaatttgccttcctctctgcctgccaaaagttggtatttaaggtgtgcaccaacacaccaggctctaccttgtctttttaaaataaggcttctcacctgttaccctgattaagctgtgattaagtcagtgaactccagggacccacccgtctacctacatggtgacaccatgtgtgttctacagactgaattcaggtcctcactttacagaacaaacaAtttctccagagacagtgtctctgtgtatcctggaatgcacgctgtagacaaggctgccctcaaactcagaggtccacctgtctgcctagtgggattaaaggcctgcatcaacaccgcttggctGCTAATGTGATGCTTTAATACCTAAAACGTGGCTGCCACTTTCTCTGAGGTCCTTTAGCATTCTGTGTTCTGAACCTCGGTGTTTTTGCCCCAGGGGCAGCGTTTTGGGTGGAAATACACCCAGCTGTCAGGACGTGTATGTGTCATGTGCGGATTAAGAACCCACTGTTTCTTTCCATTTGACTCGCACTTGTGTGATGAGTCCCCATGACACTCCTGGGTATGCTGAGACCTTAGCGTCATGTGACTTCTCCCTGCACGTGTGCCTGTGTGCTCCAGCCCCACCTCTGTCTCACGCTGGTTTTTGTCTAGACCTGCACTGTTGAGCACTGTAAGTGAACAGATTGATCCCCCTTCATTTTGTTTGTCCCTTTATGGTTCTGTCCCATCCATTGTCATAAGCAGGGTCTTCCTAGAGGACTCTGCCCCTCTTATGGTTCAGCCTGGAGTTGGAATTACCACTGGGTTAGGTTGTGGCTTCTTAAGGAATTGAGACCTGACACTTTGAAGTCCCCATGATGGTTGAGTCAGTGACTGGGGGTAGCCTTCCATCAATTTCAGATCGGAAATTTCAGTATAGGAAATTGTtgggaggctgggggttgggaggtggggcatgtgtgaggaggaagTCCCCGGTCTCAGACTTACTTCCTGCTTGTTCCTAGTCCCTGCAGAACAACTGATTTGTTGTAAGCTCAGAACTCAAGCTCCACCCTGCTAGAGGAGAGTGGTCAGTTTCCTTCCTTCCTCCCTGCACCCAAGGTTCAGTTAAATCCCATCATGCTACCTCAGCAGACTCCCCAGGTCACTCCTCCCACCTCCAGGATCTTGCTGGTCTTTGCATCATCTTTAGATGAGTCTTTCTGAAACAACCTTGGCCTTGTATCCCCCACACgtgtgttttctctcaccagtcccatagactgtaagcccctgtggcagggtctatgagtgagtcgcctgtgttaaccttcagtggtacctaccaataaatattcttggctgaataaatgaaA 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