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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Rpl36aP21
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Rattus norvegicus
Coordinates chr6:91475382-91475557  UCSC
Strand -
Parental Sequence NM_001128065.1
Parental seq. overlap 150 bp
Parental seq. overlap (%) 22.4%
Genomic Region Intergenic
Retrocopy Summary Rpl36aP21, located on chr6:91475382-91475557, is a retrocopy of the parental gene Rpl36a. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Rpl36a
Full Name ribosomal protein L36A
Also known as -
Coordinate chrX:105402867-105405580
Strand +
Gene summary Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Part of cytosolic large ribosomal subunit. Orthologous to human RPL36A (ribosomal protein L36a). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Mouse Mus musculus Rpl36aP15
Rabbit Oryctolagus cuniculus LOC100353469P23
Pig Sus scrofa RPL36AP1
Sheep Ovis aries RPL36AP6
Panda Ailuropoda melanoleuca LOC100472553P30
Cat Felis catus LOC111559192P15
Pale spear-nosed bat Phyllostomus discolor RPL36AP8
Velvety free-tailed bat Molossus molossus RPL36AP1
Greater mouse-eared bat Myotis myotis RPL36AP1
Kuhl's pipistrelle Pipistrellus kuhlii RPL36AP2
Greater horseshoe bat Rhinolophus ferrumequinum RPL36AP14
Egyptian rousette Rousettus aegyptiacus RPL36AP10
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Rpl36aP21
CTGCAAAGATGGTCAACGTACCTAAAACCCGAAGGACTTTCTGTAAGAAATGTGGCAAGCACCAGCCTCACAAAGTGACCCAGTATAAGAAGGGCAAGGATTCCCTGTATGCCCAAGGAAAGCGGCGCTACGACCGGAAGCAGAGTGGCTATGGCGGGCAAACAAAGCCAATTTTT
>NM_001128065.1
CGTTGCTGCTCTAGCCTCTCTCTTTCTGAGCTGGTAGCGCTCCTGCAAACATGGTGAACGTTCCTAAGACCCGCCGGACATTCTGCAAGAAATGTGGGAAGCACCAACCCCACAAGGTGACGCAGTACAAGAAGGGCAAGGATTCTTTGTATGCCCAGGGAAAGCGGCGTTATGACAGGAAACAGAGTGGCTACGGCGGGCAGACTAAGCCCATTTTCCGCAAAAAGGCTAAAACTACAAAGAAGATTGTGCTGAGACTGGAGTGCGTTGAGCCCAACTGCAGATCTAAGAGGATGCTGGCTATTAAGAGATGCAAGCATTTTGAACTAGGAGGTGACAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAGCTGATTTTGTTATGAAGACAATAAAATCTTGACCTTTCACCCCCTTTGATTGCTGTTGGTCTTTTGGGAAGGGGTACAGCTTTCAGAAATGACCTGAAAGGCTGTGTTTGGTACTTGAGCACTACTCTCAGACTGAACCTTGTTGAGTGGTGAGAAACATGACTTGTCATTGGGTTCCCTACTTGGTGTTTAGAATCCACAGGCTGCTGCTAATTTATCATAAAATCCAAAGTAGAGTAGAGAGtcttatttacagtccacactttatccccatcctggaccctccgactactccac

Publications

PMID - Link Title