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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100353469P23
Plot displaying the genomic locations of a retrocopy (in chr17) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Oryctolagus cuniculus
Coordinates chr17:68775897-68776221  UCSC
Strand -
Parental Sequence XM_002720365.3
Parental seq. overlap 284 bp
Parental seq. overlap (%) 51.6%
Genomic Region Intergenic
Retrocopy Summary LOC100353469P23, located on chr17:68775897-68776221, is a retrocopy of the parental gene LOC100353469. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100353469
Full Name N/A
Also known as -
Coordinate chrX:87988929-87991669
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Mouse Mus musculus Rpl36aP15
Rat Rattus norvegicus Rpl36aP21
Pig Sus scrofa RPL36AP1
Cow Bos taurus RPL36AP8
Sheep Ovis aries RPL36AP6
Horse Equus caballus RPL36AP1
Panda Ailuropoda melanoleuca LOC100472553P30
Cat Felis catus LOC111559192P15
Pale spear-nosed bat Phyllostomus discolor RPL36AP8
Velvety free-tailed bat Molossus molossus RPL36AP1
Greater mouse-eared bat Myotis myotis RPL36AP1
Kuhl's pipistrelle Pipistrellus kuhlii RPL36AP2
Greater horseshoe bat Rhinolophus ferrumequinum RPL36AP14
Egyptian rousette Rousettus aegyptiacus RPL36AP10
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Dolphin Tursiops truncatus Without Homology
Dog Canis familiaris Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100353469P23
AACATGGTCAATGTACCTAAAACCCGAAGGACTTTCTGTAAGAAGTGTGGCAAGCATCAGCCTCACAAAGTGACCCAGTATAAGAAGGGCAAGGATTCCCTGTATGCCCAGGGGAAGAGGCGCTATGATCGGAAGCAGAGTGGCTATGGTGGGCAGACAAAGCCAATTTTCCGGAAGAAAGCTAAAACCACGAAGAAGATTGTGCTACGGCTTGAATGTGTTGAGCCCAACTGCAGATCCAAGAGGATGCTGGCCATTAAGAGATGCAAGCATTTTGAACTGGGTGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAA
>XM_002720365.3
CGCTCCCATAGCCTCCCATGAGGAAGTGCGACTGGGAACCGCCTATATACTTCCGCTTCAGGCCGGTTCTCTTTCTTTCCGAGCCGATAGCGTTCCGGCAACATGGTGAACGTTCCGAAAACCCGCCGGACCTTCTGTAAGAAGTGTGGCAAGCACCAGCCCCACAAGGTGACACAGTATAAGAAGGGCAAAGACTCTCTCTATGCCCAGGGAAAGCGGCGTTATGATAGGAAGCAGAGTGGCTATGGGGGACAGACTAAGCCGATTTTCCGGAAAAAGGCTAAAACTACAAAGAAGATTGTGCTGAGGCTTGAGTGTGTGGAGCCCAACTGCAGATCCAAGAGAATGTTGGCTATTAAGAGATGTAAACACTTTGAATTGGGAGGAGATAAGAAGAGAAAGGGGCAAGTGATCCAGTTCTAATCTTCGTCTTCTGTTTTGCTATGAAGACAATAAAATCTAAAGGTTACCACTGTTCAGTTCATTTGGTCTTTTGGAAGGGAATGAACCAAAGCCATCAATAAAACTCCTCTTGGAAAATTTTAAGTTT

Publications

PMID - Link Title