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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC101320609P1
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Tursiops truncatus
Coordinates chr13:28343362-28343583  UCSC
Strand -
Parental Sequence XM_033849393.1
Parental seq. overlap 175 bp
Parental seq. overlap (%) 21.9%
Genomic Region Intergenic
Retrocopy Summary LOC101320609P1, located on chr13:28343362-28343583, is a retrocopy of the parental gene LOC101320609. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC101320609
Full Name N/A
Also known as -
Coordinate chrX:63288041-63341389
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Mouse Mus musculus 2610002M06RikP2
Chinese hamster Cricetulus griseus LOC100755586_1P1
Horse Equus caballus LOC100071734P2
Pale spear-nosed bat Phyllostomus discolor CHMP1B2P3
Velvety free-tailed bat Molossus molossus CHMP1B2P2
Greater mouse-eared bat Myotis myotis CHMP1B2P3
Kuhl's pipistrelle Pipistrellus kuhlii CHMP1B2P1
Greater horseshoe bat Rhinolophus ferrumequinum CHMP1B2P3
Egyptian rousette Rousettus aegyptiacus CHMP1B2P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rat Rattus norvegicus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC101320609P1
ATGGGCAAGGTGACCAAGTCGATGGCCGGTGTGGTTAAGTCGATGGACGCGACGTTGAAGACCATGAATCTCGAGAAGATCTCCGCCCTGATGGACAAGTTCGAGCACCAGTTCGAGACGCTGGACGTGCAGACGCAGCAGATGGAGGACACGATGAGCAGCACGACGACGCTGACCACTCCCCAGGGCCAGGTGGATATGCTGCTGCAGGAAATGGCAGAC
>XM_033849393.1
cctgcatcaacaggcggactctcaaccactgcgccaccagggaagccccaagGATTCACAGGActcagcatatagttggattcaTGGCTATGACATATTACACTAAAGGATACAAAGGGAAAACACATGGGGCGATGTCTGGAGGAATCCAGGCTTAAGCTTCCAAGAGTTCTCAGTGGAAACACACAGGAGAAGCTTAATTCCTGCAGCAACAAATTGTGACAACATATGTTAAATGTTGTCTACCAAGCCATTCAGAAAGGCAATACAGAAGCTGCAAGACATGCTGAAAATGCAATCCGCCAGAAGAACCAAACAATTAATTTCTTGAGAATGAGTGCTAGGGTTGATGCTGTGGCAGCCAGAGTTCAAACTGCAGTTACAATGGGCAAGGTAACCAAGTCCATGGCAAATGTAGTTAAGTCTATGGATGCTACATTGAGGAGTATGAACCTTGAAAagATTTCTGCCCTGATGGACAAATTTGAACAGCAGTTTGAAACACTGGATGTTCAAACGCAACAAATGGAAGACACAATGAGTAGTACTACAACCCTAACAACACCACAAaaCCAGGTGGATATGCTGCTTCAAGAAATGGCAGATGAAGCTGGTGTAAGTGTGATACCAGATGCTGTCAGACACAAACTATCAAGCTATGGGATGTCTGCTTCAGGAAACTCAagataagtttgaggagaaaggaaatggaaTATACAATGTCTATCCTCAAGAGAGTAAAGATAAATTGTTTAGATCTTCACTTGATAAACTCTTCCTGGACACCTTGGCCTGCAATT

Publications

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