Retrocopy Name | 2610002M06RikP2 |
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Species | Mus musculus | |
Coordinates | chr18:67338652-67339167 UCSC | |
Strand | + | |
Parental Sequence | NM_025921.3 | |
Parental seq. overlap | 419 bp | |
Parental seq. overlap (%) | 7.2% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | 2610002M06RikP2, located on chr18:67338652-67339167, is a retrocopy of the parental gene Chmp1b2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | Chmp1b2 |
Full Name | charged multivesicular body protein 1B2 |
Also known as | 2610002M06Rik|8430408J07Rik |
Coordinate | chrX:106826357-106859940 |
Strand | - |
Gene summary | Predicted to enable MIT domain binding activity and identical protein binding activity. Predicted to be involved in several processes, including midbody abscission; regulation of cell cycle process; and viral budding via host ESCRT complex. Predicted to be located in endosome membrane; midbody; and nucleoplasm. Predicted to be part of ESCRT III complex and membrane coat. Predicted to be active in multivesicular body. Orthologous to several human genes including CHMP1B (charged multivesicular body protein 1B). [provided by Alliance of Genome Resources, Apr 2022] |
Species | Scientific Name | Retrocopy | |
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Rat | Rattus norvegicus | RGD1566265P2 |
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Chinese hamster | Cricetulus griseus | LOC100755586_1P1 |
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Dolphin | Tursiops truncatus | LOC101320609P1 |
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Horse | Equus caballus | LOC100071734P2 |
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Pale spear-nosed bat | Phyllostomus discolor | CHMP1B2P3 |
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Velvety free-tailed bat | Molossus molossus | CHMP1B2P2 |
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Greater mouse-eared bat | Myotis myotis | CHMP1B2P3 |
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Greater horseshoe bat | Rhinolophus ferrumequinum | CHMP1B2P3 |
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Egyptian rousette | Rousettus aegyptiacus | CHMP1B2P1 |
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Human | Homo sapiens | Without Homology |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>2610002M06RikP2 |
GGAAGAAAAGGCCGAAAAGGCCAAAATTAAAAAGGCCATTCAGAAGGGCAACATGGAAGTTGCGAGGATTCACGCCGAAAATGCCATCCGCCAGAAGAATCAAGGGGTGAACTTCTTGAGAATGAGTGCACGAGTGGATGCGGTGGCGGCCCGTGTCCAGACTGCAGTGACGATGGGCAAAGTGACCAAGTCCATGGCGGGTGTGGTTAAGTCGATGGACGCGACGTTGAAAAGTATGAATCTGGAGAAGATCTCCGCTTTGATGGACAAATTCGAACACCAGTTCGAGACTCTGGACGTCCAGACGCAGCAAATGGAAGACACAATGAGCAGCACGACGACGCTGACCACTCCCCAGAACCAGGTGGATATGCTGCTCCAGGAAATGGCAGATGAGGCGGGCCTCGATCTCAACATGGAGCTGCCTCAGGGCCAGACCGGTTCCGTGGGAACGAGCGTGGCTTCGGCTGAGCAAGATGAACTGTCCCAGAGACTGGCCCGCCTTCGGGATCAAGT |
>NM_025921.3 |
TAGCTCGTGGGACTCCACCCACCACGGGTTCTAAACCGAAACAGGAAGTGGGCTAGGATCCCTCGAAACCCGCTACAACCGCCACCCTCCGCGCGCCCAAGCGACCCACAACTCGCGGGTCCAGCCCCTGTCCCGCGTGttacctgcccctccccctcctcccgccCGGTGAACTCGAGAGATCATGTCGAACATGGAGAAACACTTATTTAACTTGAAGTTTGCTGCAAAAGAACTTAATAGGAATGCCAAGAAGtgtgataaagaagaaaaagctgAAAAGGCCAAGATAAAAAAGGCCATTCAGAAGGGCAATACAGAAGTTGCAAGAATACATGCTGAAAATGCAATCCGTCAGAAAAACCAAGCAATCAATTTCTTGAGAATGAGTGCTAGGGTTGATGCTGTGGCAGCCAGAGTTCAAACTGCAGTAACAATGGGCAAGGTGACAAAATCCATGGCAGGTGTAGTTAAATCTATGGATGCTACATTGAGGAGTATGAACCTTGAGAAGATTTCTGCCTTAATGGACAAATTTGAACATCAGTTTGAAACATTGGATGTTCAGACACAGCAAATGGAAGATACAATGAGTAGCACTACTACCCTTACGACACCACAGaaCCAAGTGGATATGCTGCTCCAGGAAATGGCAGATGAAGCTGGCCTCGATCTCAATATGGAACTACCACAGGGTCAGACAGGGTCTGTTGGTGCAAGTGTTGCTTCTACAGAGCAGGATGAACTGTCACAGAGGCTTGCTCGTCTTCGTGATCAAGTGTAACTTAAATAACTGGTGCTTCTGTTCCTCCACATATTTCTGAgccatcatttgtgtgtgtgtctatagatAAGGTGTATTCCAGTTACAAAAACATCATACATGACAGGATGTTTGGACATCATTTCtataagatgctttcttttgccttgtGTATTTCACAGTGCATTGCGAAATTCCAAGGAATTTCCACATTGGCAGATTTTATAGTTCTATATATTGTGTGTAAAAGTGTGAGGGACATATTTTTCTAGATGTCTTTGGCAAAGCTAGCATTAGTTTTCTGTATATTATACATCTTCCGCAAATATTAGAGCAAACATCTAGCACCAAAGTAATGCTAAGTAAAGTAATTTTGTCAGAATAATGTATAAAGGCTTTGTTTTTACTTATTGAAAGTAACTTTCAATTATTGTCTGTGATGAATTTtgattttgtaaaaataaaaacaggaaagcatGTTCATTTAATATGTTCGCATAACCCAGACCATCTTATTTTAAGTATCACAAGATAGACTATACAATTTCCATGggatttttgaaaattatttctattttgtatgtatggttgttttgcctgcatgttaaATTGTGTACTCacttgtgtgtctggtgcctacagaggccagaagaggacattggattcccCAGGAACTAGAGCTATAGACAATTGGGAGCCAACATGTGGATACTAGAATTCAAACCCATTTCTTCtagaagaccagccagtgctcttaactcctgagccatgtGTCTAGCCTCTGTTTTGTttcgttgctgttgttgttttgcttgtttattttagagacagggcAGAAATATATAGCCCAGAGTTCCCTGAAACTCAGTGAGCCTCCAGCATTGGTCTCTAAGTatataccaccatacccagctcattTTCtatgatttgggggtgggggttgttatGCACATTagttattttttctgtttctatgataaaTAACCGTGCTCAAAAGTGacttatggaagaaagaaagtattTTGGTTTATGGTTCCAGGGAAATGAGGgctccatcatggtggggaggtgTGGCAGCAAGAGCAGGTAGCTGGTACATGTTTAAtgacacacacaaagcagaaagaACAGGCTGCCAGTGTAACAGACCTAGAAGCTCTCAAAGCCAGTGACATACTTCATTTAGTAAGGTTGCATATCTCCATACCTTCTCCATAAGGCACCACCAACTGGGAAACAATTATTCAAGTACATGAGTCTATGGAAAAATGTCTCGTTCAGACCACTGCATTCCTCTCCCTGGCTTCCATAGACTTatggccatatcataatgcaaaatgtatttacTCTGATGCTTAAAGTGCCCATGGTCTTTCTCAATCTCAATACTATTTGAAATTTCAAAGTCCAGCATATCTTGTGAGACTCGAGACAATCTCTAGCCACTGATAAGATCTAAAAGCAAATAATATACTTCCAACATACGATGGCACAGGTTACACATTATCATtttagaagggaggaagggggacatgatgaggaaatactggactaCAGAGAGACTGAAAGCTCACAAGGCATACATATAAGCAAATCCTGTAGCTCTATGTGGGATGTCTGGGACTACTTTCCGAGGGTTTGGATGGCTTAACTCCTCCAGCTTTGCTGCCTGATTTAATAGCTCACTCTCTAGTAACATCTTCTACGttagttacttctctgttgctgcgATTAagcaccatgaccagaagcaatttataaatagaagagtttattttggcttacagttccagagggataagaaaGTGTGCACCATGGCAGGGATGCATGGTAGCAGGATCAGGAAGCCAAGAAATCATGCTTTCTATTATGCTGTACACATGACGCAGAAAGAGCCAGCTGGAAGTGTGGCAAGACACTCCCAATGCCTGTTGCTGGTGGAATAATTCCTCCAACAGAGTTTGTACAATGACCTGTACCATAACCTTCCCAACTGGTGAACAAagtttcaaatatgtgagcctatagGAGACTCATTCAATTCAGAACATTATGTAAAGAGAAACAGAGTAAATATTTACTTGGTTTTAATCCACTGTAAAGTTTAAATCATTATAGTTTTTAGCCAGTAATTTAATGATGACTGTTCATTAATTTTTAAGACCTTTTAATGGACAATTTATTATATAACTAGGAAAATTCTGCAACATTAATCCAAAGTTTGTATTGGGATACCCTAGATATCCATAGAAGAGATTTGATGGACAAAAGTATTTATGACATAAAGAATGTGTTCTCTGTTGGTATGAATTAAATAGTTTCTGTTCTTTTAACTTGAATAAAAAATTGTTAGATTTATTACTACCACTTAGCTCCACAACTAGCTGTTCATTCTTTTATGTTGCAACCATGTCAGActtaccttttaaaatattactatcAGGGCTGTAAAGTTAATACTACCATTTCAAGAGGATCTGCCTTTGTGTCTCAGCAGCACATCAGTTACCTCACAACATCCTGTAAATCTGCCTCCTGGGGATTCAGTGACCTTTCCTGGTTCCCACAGGGTACCTGAACTCATGTGTatagatgcacacagacacacacataatttttaaaataaagatatacTGGACATGGtcacacatacctttaatctcagcactcaggagactgaggctgtgagttccaggccagccgaaGATACATTATGAGACCAcatctcaaaaaatatttgtaaaacattGATGAGGCAGGTAAGATAGTTGAGTAGATataagcacttgccaccaagcctggcaacctgagttcagttcctgtgACCCACATGGTAGATGTAAAGATTTGCtcctgcaaactgtcctctgacctccacacacattccATTGCATGCACacaagttttaaaattagaaactaCATTAATGGACactaagttttatttttcccttcatTTGTTCACTCTTTTATCAATGTAATGAAAATGTACCTCTTAGACTTTATTCCTAAACCAATAACCTAAGCATGTGATGGTATCATTTGGTTGAACATATATACTCAGATACTTAAAACATCTTGTTGCACTTTCCCCTGTTGGATAAAAAGGCTGATGATAATTCTCCATTTCTTTATGTGTCTTAATGCTTAAAGCCATCTGGTTGCCTGTGAACCATTTTAGGTACCATTATGGACTAGGCTATTTTACCTGGTTAATTGATTGCTTACAAATACCACTTGGAGAAGAAGGAATGAGTAACTCTGAGAAGAGATGTGGACTTTAGAAAATTCTCAGGAAGGAGCATCTGTAGTATTGGgagaaagcaaaatgaaatgaTAGACTGGCAGAAGTAAGCTTGCCAGCTTCCTATGGATTAATAATGTTTGTTGCTAATGATGTTGAGATAAACTGAGAAAGCGTGCCATTTAAAAATTCTAATAGgaaatagagagatggctcagagttaagaGTACTGTACGCTCTTGCAgcggacctgggttcagttcccaacacccacatggtggctcacaactgtccaacCCCCCTTTTTAATGTTTATGGGTTTTTGTGCACATATGGTGCATGATATGTGCACTCAGATAtgcatgaataaatattttttgaagttATATTAACTCCTACTATTTTTTCATGGGATGATTTCATAGTGTATTTTTTCACAATCATAATCATTATTTGCCTATTCATTTCTCTAATACTTATTGAGAGTGTACTTGCTATGTGCTATGGCGATTTGGTTTTGAAGATTGAAGGGAGGCAGGGCAAGAAATTCTCAATTAACTACAATTGAAGATACTAAGTGATCTCTACAAGATCAGGCCTAACTCACCTGTGGAGCTGAACTCTAGGATTTTGACTACTTTCTCTGTTGCATAGAATAATGGCATTCATTGTTCACATTGCCACCTACAAACTAAATTATCTTACCTACTTCCAAAAATGGAGAGCATATGAGGAATGGTCAACTCCCTGCATTGTCATGTGTATTCAAAACAAAGTTATTTATCATCTACTGTTGTGGAAAATGTTATTTGggagtttctaccccaccttagatcatttagttcccaaataaaagattCCAAATCTCTATATTTGTAATAAGCTTTGTagtactagagctgggcagatatcaaccctctgtgCTATTTGTTCTACTTCACCATCAGTAATACTGAGACATCACTTGCTCTGTTCTGCCTGgtccactcctactccaacagacTGGCCCTCAGGGCTATGCATCCTTGATTTACCCCCTTGgtgccttcttcctcctctctacaGAAGCCCTGCCTACCATTCTTTTGCCCTGCTACAGGCAATTTTAAATTAAAGTAGCAgggtttgcacaacaaaaactGGTATTTGTGAAAATTCACTTGAGGCAAATAGAccttggggtacagaatttagcattacaatacatagcagcaGACCAATCCTCAACAATTTACTGTATTTCTGATTTTCCACTATTTGGTATTCCTTAGAGATACCTTTCATGAAAATTTCTTTGAAATACACACACTGTATCACCAAATCCTTCAGTATGACCTTATCTAAATTCAGTAACTCAAATGCCTCATTCTaccaaaatatttgaaatataacaaGCCCAAGTAACTTTTGAATGGAGAAGAGATTAACATGGATAAAGTTGGAATGGAATTGGGAGTCTAAGGCTGAGTATTGTGAAAGGAGTGCTTGACATGGCCTTTGGAAAGACGTGGGAGGAATCTGCTGTAGAAAAGTTTTGTCAGTCTCTATGGTACATAGGCTCGGCTTTAGCCCTCATACATGTGATTACTTCAACCTTTGTCAGGGGTCAGCACAATCTGCCTGTTTCATCTTCATCGCCCACACTTGAAAACATcttaatgtctttgtttttcttgtgaGAGAATTAGATCTCAACTATCTCAATATGTTTGACAAGCCTTAGTGTACATTTACACCTGAATTTGACATGTAAATAGCATCTTTGTCAAACTGGAGGGAATGTAAATGATGGATATGTCAGTGCTCAATAAACAGTTCTAGAATGATTATTTGAAA 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