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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL12P15
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Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Tursiops truncatus
Coordinates chr13:51956828-51957049  UCSC
Strand +
Parental Sequence XM_033858637.1
Parental seq. overlap 189 bp
Parental seq. overlap (%) 29.6%
Genomic Region Intergenic
Retrocopy Summary RPL12P15, located on chr13:51956828-51957049, is a retrocopy of the parental gene RPL12. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL12
Full Name N/A
Also known as -
Coordinate chr6:107389505-107393422
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL12P40
Chimpanzee Pan troglodytes RPL12P39
Bonobo Pan paniscus RPL12P36
Gorilla Gorilla gorilla RPL12P36
Orangutan Pongo abelii RPL12P45
Gibbon Nomascus leucogenys RPL12P13
Green monkey Chlorocebus sabaeus RPL12P27
Crab-eating macaque Macaca fascicularis RPL12P44
Rhesus Macaca mulatta RPL12P45
Baboon Papio anubis RPL12P43
Golden snub-nosed monkey Rhinopithecus roxellana RPL12P48
Marmoset Callithrix jacchus RPL12P48
Mouse lemur Microcebus murinus RPL12P18
Pig Sus scrofa RPL12P7
Horse Equus caballus RPL12P6
Dog Canis familiaris RPL12P9
Panda Ailuropoda melanoleuca RPL12P47
Cat Felis catus RPL12P45
Velvety free-tailed bat Molossus molossus RPL12P16
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL12P15
aagaaaaatattaagctCAGTGGAAATACCACTTTTGATGACACTGTCAGCATTACCTGACAGATGCAGCACTGATTTTTAGCCAGAGAACTCTCTGGAGCCATTAGAGATGACTGCACAGTCTGTGGGTTGCAGTGTTGATGGCTGCCTTCATGACATCATACATGACATGAATAGTGTTACAGCAGAATGCCCACCTAGTTAAGAACTACAAAGGAAAAT
>XM_033858637.1
CTTCCGGTCTTTCGGTTTTCGGCTCGGAGGAGGCTAAGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCAGCCGCCTCCACCATGCCGCCTAAGTTCGACCCCAACGAGATCAAAGTCGTGTACCTGAGGTGCACCGGTGGGGAAGTCGGTGCCACGTCTGCCCTGGCCCCCAAGATCGGCCCCCTGGGTCTGtcTCCAAAAAAAGTTGGTGATGACATCGCCAAGGCAACTGGTGATTGGAAGGGTCTGAGGATTACAGTGAAACTGACCATTCAGAACCGACAGGCCCAGATTGAGGTGGTACCTTCTGCCTCTGCCCTGATCATCAAAGCCCTCAAGGAACCgccaagagacagaaagaagcagaaaaacaTTAAGCACAGTGGAAACATCACTTTTGATGAAATTGTCAGCATTGCCCGACAGATGCGGCATCGATCTTTAGCTAGAGAACTCTCTGGAACCATTAAAGAGATCCTGGGGACCGCCCAGTCTGTGGGCTGCAATGTTGATGGCCGCCACCCTCACGACATCATAGATGACATCAACAGTGGTGCAGTGGAATGTCCAGCTagttaagaactgcaaagaaaaataataaagggttATTTGACAAGCAGTGGA

Publications

PMID - Link Title
No publications available for this retrocopy