Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HPCAL4P2
Plot displaying the genomic locations of a retrocopy (in chr20) and its respective parental gene (in chr2). Each line represents a retrocopy.
Species Choloepus didactylus
Coordinates chr20:59599479-59599839  UCSC
Strand +
Parental Sequence XM_037827607.1
Parental seq. overlap 298 bp
Parental seq. overlap (%) 7.6%
Genomic Region Intragenic (HPCAL1)
Retrocopy Summary HPCAL4P2, located on chr20:59599479-59599839, is a retrocopy of the parental gene HPCAL4. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HPCAL4
Full Name N/A
Also known as HPCAL4
Coordinate chr2:210051501-210073585
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HPCAL4P2
Chimpanzee Pan troglodytes HPCAL4P2
Bonobo Pan paniscus HPCAL4P2
Gorilla Gorilla gorilla HPCAL4P2
Orangutan Pongo abelii HPCAL4P2
Gibbon Nomascus leucogenys HPCAL4P2
Marmoset Callithrix jacchus HPCAL4P2
Dolphin Tursiops truncatus HPCAL4P2
Horse Equus caballus HPCAL4P2
Cat Felis catus HPCAL4P1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HPCAL4P2
GAACAGCAAGCTGCGGCCCGAGGTGCTGCAGGACCTGCGGGAGAACACGGAGTTCACGGACCACGAGCTGCAGGAGTGGTACAAGGGCTTCCTCAAGGACTGCCCCAGCGGCCACCTGACCGTGGACGAGTTCAAGAAGATCTACGCCAACTTCTTCCCCTACGGCGACGCCTCCAAGTTCGCGGAGCACGTCTTCCGCACCTTCGACACCAACGGCGACGGCACCATCGACTTCCGGGAGTTCATCATCGCGCTGAGCGTGACGTCGCGGGGCCGCCTGGAGCAGAAGCTCCGCTGGGCCTTCAGCATGTACGACCTGGACGGCAACGGCTACATCAGCCGCAGCGAGATGCTGGAGATC
>XM_037827607.1
TGAAAGCTCCCTGCTGTGTCAGGAAAGAGGCCCCGCCATGGGGAAGACTAACAGCAAGCTGGCCCCAGAGGTGCTGGAGGACCTGGTTCAGAACACGGAGTTCAGCGAGCAGGAGCTGAAGCAGTGGTACAAGGGCTTCCTGAAGGACTGCCCCAGCGGCATCCTCAACCTGGAGGAGTTCCAGCAGCTCTACATCAAGTTCTTCCCTTACGGAGACGCCTCCAAGTTCGCGCAGCACGCTTTCCGCACCTTTGACAAGAACGGCGACGGCACCATCGACTTCCGGGAGTTCATCTGCGCCCTTTCGGTCACCTCGCGCGGCAGCTTCGAGCAGAAACTCAACTGGGCCTTTGAAATGTACGACCTGGACGGCGACGGACGCATCACGCGCCTCGAGATGCTGGAGATCATCGAGgCTATCTACAAGATGGTAGGCACTGTGATTATGATGCGCATGAACCAGGATGGGCTCACACCACAGCAGCGAGTGGACAAGATCTTCAAGAAGATGgaccaagacaaggatgaccagaTTACACTGGAAGAGTTCAAAGAAGCAGCCAAGAGTGACCCGTCAATTGTGCTGCTGCTGCAGTGTGACATGCAGAAGTAGAGGCTGGTGAGGGGCTGGGCCATCGCCCAACCCGATGACCTCTCTAGCTGGCCCTTCCCCTGGGGGAGGGGTACTCCAGCATTACTCCCTGGTCCCCCACCCCTCTGCTCCATGCCCTTCCTCCTCTCAGTCAAGATCCTCAAGGGACCACCTCACCCTGCAAAAGAGACAGGTCCTCAGGTATCCTGTAATCTAGCCCCACTCTGAGCCTGGGTCCAGAACCAGCATCCACTGGGCATAGGGGAGTTGGCCTGTGCCCCAAGAGTCAGGGTTAAGGATGTGGGCTGAGGTTCTGCTTTGAAATTCTGTTCATTCCTAGGATTAAGCTTTATAGGATATGGTCCCACGGGCCCTAGTGAAAGGTCCAAATTGGATCTGTCTTTTCCTGAGAACCCAGATCCCTTAGAGGTGGTCTCTTTCCTGCCCCTCGACTCTCCCTGGCTCCTCTTGGCCCTAGCCTTTGGGGTGTTTATTCGGTTCTTTGTTCAGCTAACAAATTGAGCAGctgttctgtgccaggcacctCTAGGTGCTAAGAATATGGTGGTTTACAAGTCATATTCCATACCCACTTGAAGCTCATAGGGTAGTGAGCCAAATTTTCTATGGTTAGGATCTCAGAGGGGGATGCTGAGCACAGCTGAGCAGGGGGTGCAGTAAGGCTTCTTAGTTTGAGAGGAGCTGTTAAACCTTCCAGCTCAGCTCTGCACAAAGCTGCAGAAGGATGGAATGGAAAGTGTTTAGAAGCTTAGGAGCCACATGAGTGGGGAATAGtggaagtttagagaaaaattgaaatttatggaatatttatttttttagtaccCTTTAAAAGAGCTAAAGTCATTTTATTagtttaagatattaaaatgtagtCTATATGACTTGGTTAAATGACTAAGTGAATACAGAAAATGCTGATTTTTAGGAAACAAAGAGCTGAGGAAAAAAGGGTATGTGGGGGGGGTGGTGGGCATCAAACTTACCAGATAACACTTTTTCTTATGTCTCGGGCCTGAGCTGTCACATTCAGCAGATTCTGCTGTTTctgctgcttttttttaattacctttttTTAGTTCAATGAGCAACTCTATTGTACCTACTATGGTTGAATATCAACTACAGAGATAGAAAAACCAAGGTTTGCCAAGAGCAAAACAAGTGTATTTCCCACATCTTGGTAATTCATTTCTGGACTTGGTGTAGTTTCCAGGATGGGCTGCCACAGAAGCAAAGAGTTGGAAGAAGAGGACCACCTGGTCACTGGAAAGATCCTGTTTTTAGGCTCCCAGGCCGAATTTATGAACCAAACGCCTAAAGCTCTGCTGGGTGTGCTCCATTTGAAAGGCTTTTTCTAACCCTAAGTACTAAATCTGCCAGGTAATTCATCATCTTCCAAGTGCCCTGGCTTTGCTTTCTGATGTCTGCTTTCCAGGTTTGGATCCATCTGCTATACAGCTGCATGCTTTTACTGCCAGAAAAATTAATCTTGCTTCTTCATCAAATCTTTCACTCTACTTTCTCCTGTACTTGTTGTGATCAGCAATTTGTTTCAACGTGTAGTGACAATTGATTTCCTCTTGAACTACTGGTGAAAACAGTCTAGAACATATGTGCTGTCAgctgggatgggagtgggggagaATTGCTGAGTCAGCAAGGGGCAGCATGTCCCTCACTTTTAGGTGCTCACCTGTCCTGCCTCTCTGCAGGTAGAAACTCTTAGGGATACTGACCTTAGACCCCAATCTCTATTGTATCTTCCTTTTTGCTACCCTTGGAGATAGATGCTCCTGACCAAGCAGGGCAGCTGGGTtgccaccctctttctatctttctgCCTATGACCAGCCATATGGTAAGGCTGGGGAATTCACATCTTCAGGCAGTAACTAGCAGGTCTTTATCCAGTGATGCCTGAAAGAACATTCCATTGGTCTCAGGAGCTGGCCATTAGGTGTGTCTTTTGCTGCCAGTCAGCATTACAAACTCTGGGACCTGAATCTCCCAATGGAAGGCTTTTCACAAGGTGGTATTCTTTCCCCCCAAATGTTGAATCTAACCTAGCTTACATTTGCATAGAACTTCATGGCTTTCAAAGCCTTGGCATTCACTCATTCTATCCTCACAGCCTAGGAAAGTAGGAATTTTCATTCCCTTTCTCCAGACTgggaacctgaggctcagagaaggggagTCCCTtgtgcaaggtcacacagcccaGGAGGTGGCACAGTGCCAAGGTTTAAGCCCAAAGCTCTAAAAGGTTTCTTCCCATCAGAGTGTCTTCCCTATTCATTCCTCTGACTCTGACTTGTGCAGAGGTTGACTGTGGGACCAGCTAAGTGGTTCTGGTCTTTTACAAGCTTCCTGCTAAAAAGCTCTGGGGCTGTGATCttccaaaaagagaaaggagCTTGGTTGAAGTCTCCACACTTTCAAGCATCCTGTTTTCTGCTTCTGGGCAGCTCTGCTAATGGGCCAATGCTGGCCTAGTAGACCTCTGACTTATAACCCTAGAAGCATCTTGCACTGTCTTTACCACCATCTTCCTCCCTAagaaaactatttttgttttatcctGGCTGTTTGGCAAGTCCTACTCATGAGACCACGTGTGATCACTCCCAGCTTCTGAACATATACCCTTGGGTGGTATTTGCTGGTCACACCAAGGCCTCTCAGAGAGCTTAGCAGTGTGAACACATATTGCCAGACCAGCAATTGAAACCACCATCTTGTGGATGGGGAGGAGCCACTGGTAGGCCAGGTCTTGCTCCCACATGATCCTGGGTTTCCCAGGGACTATTTCCTCCGGAGCCCCTGTGGTAGAGCACTGGCCCTGCCTTGAGGAGAGAGGCAGCCTCCCATCTTTGCCCCAGAAGAGAGGGACTTGCCACAAAGCACAAGGTTAGCAGGGATTTAAGTATGACTTACATAGAAGAATACACAGGCACAGCTGAAAGAGCCAAACTCTCCCTTGAAGTTCTAGTCTTCTCACCGCAACTCTGAATTGCAATGTCCCACAATCTGCCTTTCCACTGTATTCTGTCTTCATTAATCCTTTTGGGATGATTGAGGAGTCCCTTGTTTCTTATCTCTAAAAATCATCAGCAAGGGCTACTTTAGATGGCACTCCAGTCCTTTGACCTTTGAGCTTTCATCAGGATTATATAATTTACCTTtgaatcaaaagttaaaaaaaaaaaaggaatcccaTAAGCCAAGGCATTAAATCCCTTCTTTCCTGACAATAACAGAGTCCCTAGAGGTAGAAATTTATCCTGCTGCAGATACAGAGGGCCAGGG

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