Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name KLHL13P1
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Choloepus didactylus
Coordinates chr10:70235209-70236967  UCSC
Strand -
Parental Sequence XM_037822305.1
Parental seq. overlap 1419 bp
Parental seq. overlap (%) 46.1%
Genomic Region Intergenic
Retrocopy Summary KLHL13P1, located on chr10:70235209-70236967, is a retrocopy of the parental gene KLHL13. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name KLHL13
Full Name N/A
Also known as KLHL13
Coordinate chrX:140855428-141224416
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens KLHL13P1
Chimpanzee Pan troglodytes KLHL13P1
Bonobo Pan paniscus KLHL13P1
Gorilla Gorilla gorilla KLHL13P1
Orangutan Pongo abelii KLHL13P1
Gibbon Nomascus leucogenys KLHL13P1
Green monkey Chlorocebus sabaeus KLHL13P1
Crab-eating macaque Macaca fascicularis KLHL13P1
Rhesus Macaca mulatta KLHL13P1
Baboon Papio anubis KLHL13P1
Golden snub-nosed monkey Rhinopithecus roxellana KLHL13P1
Marmoset Callithrix jacchus KLHL13P1
Mouse lemur Microcebus murinus KLHL13P1
Mouse Mus musculus Klhl13P1
Rat Rattus norvegicus Klhl13P1
Chinese hamster Cricetulus griseus Klhl13_1P1
Rabbit Oryctolagus cuniculus KLHL13P1
Pig Sus scrofa KLHL13P1
Cow Bos taurus KLHL13P1
Sheep Ovis aries KLHL13P1
Dolphin Tursiops truncatus KLHL13P1
Horse Equus caballus KLHL13P1
Dog Canis familiaris KLHL13P1
Panda Ailuropoda melanoleuca KLHL13P1
Cat Felis catus KLHL13P1
Pale spear-nosed bat Phyllostomus discolor KLHL13P1
Velvety free-tailed bat Molossus molossus KLHL13P1
Greater mouse-eared bat Myotis myotis KLHL13P1
Kuhl's pipistrelle Pipistrellus kuhlii KLHL13P1
Greater horseshoe bat Rhinolophus ferrumequinum KLHL13P1
Egyptian rousette Rousettus aegyptiacus KLHL13P1
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>KLHL13P1
CCCATTTGCAGCCTTGCAAGGCAGGAACCACACGTTTTTTTACCAGCAATACCCACAGTTCAGTGGTATTGCAAGGTTTTGATCAACTTAGAATAGAAGGATTGCTTTGTGATGTGACCCTGATACCAGGGGATGGAGATGAAATCTTCCCTGTTCACAGAGCTATGATGGCGTCTGCTAGTGATTATTTCAAGGCTATGTTCACAGGTGGAATGAAAGAACAAGATTTAATGTGCATTAAGCTTCATGGGGTGAACAAGGTTGGTCTGAAGAaaatcattgattttatttatactGCAAAACTTTCTCTTAATATGGACAATCTTCAGGATACACTTGAAGCTGCCAGCTTTTTACAGATTTTACCTGTTTTGGACTTCTGCAAAGTATTTCTTATATCAGGGGTCTCTTTAGATAACTGTGTTGAGGTTGGACGAATTGCTAACACCTACAATCTTATTGAAGTGGATAAATATGTTAATAATTTCATCCTTAAGAATTTTCCTGCATTATTGAGTACTGGAGAGTTCCTGAAACTCCCATTTGAACGGCTTGCCTTTGTGCTTTCCAGTAATAGTCTAAAGCACTGTTCTGAACTTGAACTTTTCAAGGCTGCTTGCCGCTGGCTAAGATTGGAAGACCCACGGATGGATTATGCTGCAAAATTAATGAAGAACATCCGATTTCCACTGATGACACCGCAGGATCTCATCAATTATGTGCAGACAGTAGATTTCATGAGGACGGACAATACCTGTGTGAATTTGCTTTTGGAAGCTAGCAATTACCAAATGATGCCGTATATGCAGCCAGTGATGCAGTCAGACAGAACGGCCATTCGATCTGATTCCACTCACTTGGTTACATTAGGAGGAGTTTTGAGGCAGCAGCTGGTTGTAAGTAAAGAATTACGAATGTATGATGAAAGGGCACAAGAGTGGAGATCTTTAGCCCCCATGGATGCTCCTCGTTACCAGCATGGCATTGCTGTCATTGGAAACTTTCTTTATGTAGTTGGTGGTCAAAGCAATTATGATACCAAAGGAAAAACTGCCGTTGATACAGTTTTCAGATTTGATCCTCGGTATAATAAATGGATGCAAGTTGCATCGTTAAATGAAAAGCGCACATTCTTCCACTTGAGTGCCCTCAAAGGACATTTGTATGCAGTTGGTGGGCGCAGTGCAGCTGGTGAACTGGCTACAGTAGAATGTTACAACCCAAGAATGAATGAGTGGAGCTATGTTGCAAAAATGAGTGAACCTCACTATGGCCATGCTGGAACAGTGTATGGAGGCTTAATGTATATTTCAGGAGGAATTACTCATGACACTTTCCAAAATGAGCTCATGTGTTTTGACCCAGATACAGACAAATGGACACAGAAAGCTCCAATGACTACAGTTAGAGGTCTGCATTGCATGTGTACAGTTGGAGACAAGCTCTATGTCATTGGTGGCAATCACTTCAGAGGAACACGTTGGTGGATATTCTTGGAATAATCGGTGTATGGTAGAAATTGTCCAAAAATATGACCCCGAAAAAGATGAGTGGCACAAAGTTTTTGACCTTCCAGAGTCTCTTGGTGGCATTCGAGCTTGTACCCTCACGGTTTTTCCACCTGAAGAAAA
>XM_037822305.1
TGCCTCGCAGCAAGAGGGAGCCCCTGCTGCGCGGCTCCACTCCCGCTTTGGCCCTCGGAGCGCAGCAGCGGGCAGACGAGCGGCGGGACCCCAGAACGCTGCAAACAAGGTCATTATCCAACTTTTAGAGGTGATGGATCATCTACATAGAGGGGAATTGGTTGCTGCAATACTCCGTAACCGATCTCTGGTGGAAGAGGAAGACCAACACATGAAATTGTCCCTTGGAAGCAGTGAAATGGGTCTCTCATCCCATTTGCAGTCTTCCAAGGCAGGAACCACACACATCTTTACCAGCAATACCCACAGTTCTGTGGTGTTACAGGGCTTTGACCAGCTTCGACTTGAAGGATTGCTTTGTGATGTGACCCTGATGCCAGGTGACACAGATGATGCCTTCCCTGTGCATAGAGTCATGATGGCATCTGCTAGTGATTACTTCAAAGCTATGTTCACAGgTGGAATGAAAGAACAAGATTTAATGTGCATTAAGCTACATGGCGTGAGCAAAGTTGGTCTAAAGAAAATTATTGATTTCATTTATACTGCAAAGCTTTCTCTTAATATGGACAACCTTCAAGACACACTGGAAGCTGCCAGCTTTCTACAGATTCTTCCGGTTTTGGACTTCTGTAAAGTATTTCTCATATCTGGGGTCACTTTAGACAATTGTGTCGAAGTTGGACGGATTGCCAACACCTACAATCTGACAGAAGTGGATAAATACGTCAATAATTTTGTCCTGAAAAATTTTCCTGCTTTGCTGAGCACCGGGGAGTTCTTGAAACTCCCTTTCGATCGTCTTGCCTTTGTGCTTTCCAGTAATAGCCTTAAGCACTGCACTGAACTTGAGCTCTTTAAGGCTACCTGTCGCTGGCTACGCCTGGAAGAGCCTCGAATGGACTTTGCTGCAAAATTAATGAAGAACATACGATTTCCTCTGATGACACCACAGGAGCTCATTAATTATGTGCAAACCGTGGATTTCATGAGAACTGACAATACTTGTGTGAATCTGCTTTTGGAAGCCAGCAATTACCAAATGATGCCATATATGCAGCCAGTTATGCAGTCAGACAGGACCGCCATTCGGTCTGATACCACTCATTTGGTTACACTAGGAGGAGTGCTGAGGCAGCAGCTGGTTGTCAGCAAAGAATTGCGCATGTATGATGAAAAGGCCCATGAGTGGAAATCACTAGCCCCCATGGATGCTCCAAGGTACCAGCATGGCATTGCCGTCATTGGAAATTTTCTCTATGTCGTCGGTGGACAGAGTAATTATGACACAAAAGGGAAAACGGCAGTCGATACAGTGTTCAGATTTGATCCTCGTTACAATAAATGGATGCAAGTTGCATCTTTAAATGAAAAGCGCACCTTTTTCCACCTAAGTGCCCTCAAAGGATATCTGTATGCGGTCGGTGGGCGAAATGCAGCTGGTGAACTGCctaCAGTAGAATGTTACAATCCAAGAACGAATGAATGGGCCTATGTTGCCAAAATGAGTGAACCCCACTATGGCCATGCTGGAACTGTGTATGGAGGGGTAATGTATATTTCAGGAGGAATTACTCATGACACTTTTCAAAAGGAGCTCATGTGTTTTGACCCTGATACTGACAAATGGATCCAGAAGGCACCGATGACCACTGTCCGAGGTCTTCACTGCATGTGTACAGTGGGTGAAAGGCTGTATGTCATTGGTGGCAATCACTTCAGAGGGACAAGTGATTATGATGATGTCCTAAGCTGTGAATACTATTCACCTATTCTTGACCAGTGGACCCCAATTGCTGCCATGTTAAGAGGGCAGAGTGATGTTGGGGTCGctgtctttgaaaataaaatctatgtAGTTGGTGGATATTCCTGGAATAATCGTTGTATGGTCGAGATAGTGCAGAAATATGATCCAGATAAAGATGAATGGCATAAGGTTTTTGATCTCCCAGAGTCTCTTGGTGGCATCCGAGCTTGCACACTCACAGTTTTTCCACCTGAAGAAACTACACCATCACCTTCTAGGGAGTCCCCTCTTTCTGCACATTAAAGTCCTCCCTAAACTAAGATGCTGTAGTCCAATCATTGCAACTCGTCATGAATTCTCTTCTTTTTTGCCTCCCTTTAGTAGTATATGTTAGGATTAGCCTCCATTAATTGATACAGATATCAGGAAAAGATGAAATTGATGTTATTTGTGCTGTTTGGCTTAGAATGTTTATAAAGTGATAACAAATCCATTCTGGAAATGTATCACATAGAACCTAATgttaacatatgaaaaaatgtttattcagtactttttaaaatgctgtgtACTGAGTGTAAGATATTTGTCATCTTACATTAGGAAGCCCAAGAAATCAAGTTGGAGGTGGATTGtcataaatgtacaactttgcTTACTaggctttaaaataaaaagtcttcTTTTCATCTTTGACAGTAAGATGTCAAAGGGAGGCAGCCTTCTCCAACAGGAAACAATACACAAGGTTGCCAACTCGCATGAGCTACCTCCCTCATTTCATAAAGTATTTTTGACATATCTGTCAACCCACTTGATTGTGTGGGTGCATTGAGAACATATAAGTTTCTTAGGTACGCaggagaaataataaatttaattcaccaatattaatttaaaaaaacggCATGACCCCCTCTCCCTATAAGCAAGGGTTTGgggttttaaaaatgtgtataaatatatatacacgcaTACATATATcaaatacaaaattaagaaattgatTGATACTTCAAATAAACgtgaaaagttttttaaaattcttccaaaaagcaGCTTCCATTAAAATGGGAATTCAGTATGCACATATAATTGTACTGAATTTAGGTGGATAAGGGCTAGAAATTTTGAGCAACTAAATTTTACCTTCAAAATCTGTATTCTACTCCTTCTCCTTTGCTGTTGAGGTAacttatatattatatgtattctGTATACTCTCAGTTCCTAAGGTTATTTAGCACAAAGTACAGCAGCTTCACCTGGAAAGCTGCTTTTGCTCAGTGAATTCAACTTCTATGTTTTATCCTTTTTTGTTCAAT

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