Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC119539563P5
Plot displaying the genomic locations of a retrocopy (in chr23) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Choloepus didactylus
Coordinates chr23:7465152-7465819  UCSC
Strand +
Parental Sequence XM_037843263.1
Parental seq. overlap 475 bp
Parental seq. overlap (%) 10.2%
Genomic Region Intragenic (ZNF664)
Retrocopy Summary LOC119539563P5, located on chr23:7465152-7465819, is a retrocopy of the parental gene LOC119539563. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC119539563
Full Name N/A
Also known as LOC119539563
Coordinate chr7:154661021-154724779
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZNF705DP1
Chimpanzee Pan troglodytes ZNF705AP1
Bonobo Pan paniscus LOC100982111P1
Gorilla Gorilla gorilla LOC101128182P1
Orangutan Pongo abelii LOC100432405P1
Crab-eating macaque Macaca fascicularis ZNF705DP1
Rhesus Macaca mulatta LOC719571P1
Baboon Papio anubis LOC101005863P1
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC119539563P5
TTAGTGCTTATCTTGTTCTGAGTGAAAATCTAGAGGAAGACAGTTGTCAGCTGAGTTACTGACAATGCAACCACTGGAGTTAGTGAGCTTGAGAGATGTAGTtatagacttcacccaggaagagtgggccCTGCTGGACAtatcccagagaaagctgtttagagatgtgatgctggagagtATCAGCCATCTGGTTTCAGTGGGTCTGCAAATCAGATGTAGGTTCCCAgttggaggaaggagaggaattgTGGAGAGAAGGAATTAGATTTTTTCCAATCCCAGAATTCAGGTGATCTGTAGGAACCTGTGCTTCGTGATGAACAGCAGGGGGAGtggtcttgaaaaagaagaaatgctaTCCATGCAAGATATCTGCAGGATATACCCATCTATCATCATGTCATTGCAGAAATCTCCTACTCAAAAGAATGGCATTACATGTAGTGAATTTCCAGAAGACTTTACTCACAGTTCCAGAGTGTCGCAACGTGTCTTCATCCATTATTCTagccttagacaacatgagacagttcacactggagagaaaccttatgaatgccaTTTATGTGGGAAAGCATTCACCAGTTTTTCTAACCTTAGAtgacatgagaaaactcacacgggagagaaaccttatgaatgtcatctatgtgggaaagccttca
>XM_037843263.1
GTCTCGTCCTCAAACGTCTCGGGGTTCGGTTCCCTGAGCCTGGGGCTGTCCCCACAGGGAGGACGCGGCTCGGTCTCCCGGGCCCACCCGGGAGGCGCCCGCGGCGCTGGGACACCTCCGGCCGCGTCCACACTTTGCTAAGCTAGTGCCTATCTGGTTGtgagtgaaaacccagaggaagacaATTGGCAACTGAGTTACTGACAATGCAATCACTGGAGTCAGTGACTTTGAAAGATGTAGCTATAGACTTCACCAAAGAGGAGTGGGCCCTGCTGGACACATCCCAGAAAAAACTGTtcagagatgtgatgctggagagtATCAGTCATCTTGTCTCAGTGGtTGTTTCAAGTGGGGAAAGTGGTcttaaaaagcaagaaatgatATCCATGCTACATATCTGCAGGAAGAACATATCTACCATCATGTCATTGAGATCTCATACGCAAAAGAATGGCTTTACATGTAGTGAATTGCCAGAAGATTTTACTCACAGATCCAGAGTGATGCAACATACATTAACTCACATGGGAAAGAAACCCTATTTCAGCCATCTATTTGGAAAAGCCCTCAGTGAACAGTCATTTTTTAATCAACCAAAGCATATTTGCACAAGAAATAAATCATATGAATGTGACCTCATTGGTAAAGCCTTTATTCAAAGCTCTGGCCTTACACATTACAATAGAACTCCTattggagagaaaccatatgaatgccacGTATGTGAGAAAACCTTCAGTATAATGTCTAAACTTAGGATACATGAGAggattcatactggagagaaaccctatgaatgtcatttatgtgggaaagccttcactgaATGTTCTTCCCTGAGATACCATgcaagaactcacactggagagaaaccctatgaatgtcatctatgtggtaAAGCTTTCAACAGAATGTCTAAACTTAGGATACatgagagaattcatactggagagaaaccctatgaatgtcatctgtgtgggaaagccttcactgaATGCTCTTccctgagacaacatgagagaactcacactggagagaaaccatatgaatgtcatctatgtgagAAAACCTTCAGTAAAACTTCCCAagttagacaacatgagagaattcatactggagagaaaccatatgaatgtcatTTTTGTAGGAAAGCCTTTGCTCAATGTTCTGCCCTTAGAcgacatgagagaattcacactggagagacaccctatgaatgtcatctatgtgggaaagccttcattcagtgttctggccttagacaacacaagagaactcacactggagagaaaccatatgaatgtcatCTGTGTGAGAAAACTTTCAGTAATATTTCCCAACTTAGACAACATGAacgaattcatactggagagaaaccatatgaatgccatctatgtgggaaagccttcagtgtATGTTCTTccctgagacaacatgagagaactcacactggagagaaaccatatgaatgccatctatgtgggaaagccttcactgtATGTTCTTCCCTGagacaacatgaaagaactcatactggagagaaaccctatgaatgtcatctatgtgggaaagccttcactcagaCTTCTGGTCTTAGAcgacatgagaaaactcacactggagagaaacattatgaatgtcatctgtgtgggaaagccttcattcagTGTTCTGCCCTTAGAcgacatgagagaattcacactggataGACACCCTGTGAATGTCATCTCTGCGGGAAAGCCTTCATGCAGTGTTCTGGCCTTAGATGACATAAGAaaacacactggagaaaaaccctatgaatgtcatctatgcaGGAGAGCCTTCATTCAATGTTCTGGCCTTAGACAACATTTGAAGTCACACTGGAAAGAAATTATGAATGTCATTTATGTAGGAAAGCCTTCATATTGTAattcttagacaacatgagaaaactcatactggagagaaaccataagAATATCCATGTGTGGAaaccttaatttatttttaaccttagacaacatgagagaactcaaactggagagaaaccctgtgAATTCCATACATATGAAAGGCTTCAGACACTCTTTTgaccttagacaacatgagagaacgcATACCACATATATTTTGAACATAGATGAGACTTTAGCTCTTGAGTTATCTTTTAAACATACTGGAAAACTTACACACTGAAGAAACACTGTAATCAGTTCTCATAGAGCCTTTAGTCATCCTAACTGCTTCAATCTAAGCCAATTCATGTTGGAGAGAATTGATATATCATCTTTGTAGCAAAGCCATTAGTAGATGGTCTGATGATATACAACACAAGAAAACTCATAATATCAATGCAAGGGACATGGAAGTCTTCATCCCCTTCTATGATAGACTAACCACAGAAATCATGAGGGAAATTCTGTGTCTGTAGTCAATTTGCCAATGCTTTAatttaatatttgtcctttaaaaaatgaGTGAACTCCATAGGAGAGAAATGCTGGTTCTGCCTTCAACCAAGCACTAGCCTTGGTGTGCAGTAAAACACTCAGCATAGCAATGACTAGTAAAATACGAGAGAAAAGTCTTTACCAGGAGGATGGAGCCTTTTGGGTAAGTGCCAGGTAATTAGTGCTGGAGAAGTTATTCAATGAAAAATCACACAAAATCATTTCATACAGCAGCACTTGTAGGGCAAGTGATAATTTAAACTGTATGAAACTCTTATATGTGTCATGTATGAAAGAATATATTCAGTGATCGTTCATTCCTTAGCATTGCTGAAAAGACAATCTTAAAGTCAATTTTGGAAAAGCTTCAGTGGATGTCAAATCTGAAAACTTGtagtgtaaaataaaatatatgaacacTTGAGCACACAATTCAGCAAAAAATCAAGAATATTAAACAAGTCTTACTATTGAAAATACATGGGATAATAATGTAGGGTCATGAAGTGACCTGGGTGTACTGAATGGTGAATTTTGTGGAAAGtaatataaaatgatattaaCTAAGATGAATACTTACATATATGTAAGCAACAAAGGTTGCTGAAAATCTAGTGTTAGATTTTAGACATTTTAGTTGTTTTATGCTGCTCTTAAAAAAAGTCTTACAGCACTCTGGAAATAACTGAATGCTAATGCAAGCATTTAGAATACCATATTATGATTCCTAACTATTACCTTAGTGTTATATATTGTTCTTGGCAAAGGTGAAaacaaatatgaataaattaaCACACTTTAAGAGTAGAGTCTGATGGTACATAAATACTCCTCTTCTAAAATACCATTGAATACTACCATCAAATTTAGAAAGGAACTAAAGataaaactatttaaatacaataaaacatGTCAGTCCTGGAGAATTGTGGGATGATTAGCTAGAAAGTCCCCAGATTCCAGAATCTGTTTGTCATTCCATACATTAGAATGTTATTGCAAATAGGCTTTATCAAACAGGAACATAGAGATCACAGCAAACAAGGACATGAAGTATATTGAAGTACTTGAAGGTTTGGAGAGTGTCCCATTGTCAGGAGGTATGCCTGTGCATCACTTCCAATTTAGAATAAGGGGGCCTTTCTGGTAATACCACTACTCCCAGACCACAAACCACCCTTGGGAAGGAACTTCcagtggggaaaaggaaaaattgagaTTGCAATTTTGCAGTTGTAGCCTCATCAGGCATCTCCCTGTTCCTACACCACCCAAAGGTTAGTATTTCCCAACATGCATTAGAGTGCCTTGTTTCCCTTACACTGCAGTGCCTAAATACCTTTAAATGGGGTCACCACCCAGTAAGTTGTTCTTCCTCATAGCCTTTATGTAGTTATTGGAGCCAATTGTTCCAGTGCCCTCTTACCCCACTGCAAGTAGGTGATAGGGAGCGTGAGGTGTCCATGATATGCCAGGTAGGTAAACCTATTGTGTCATTTGTGATGTGAATGAGGTGGCTATATCTGATTGGAGTGCAGTTGGCTATATGAATATTTTGCTAGAGATGTTTCTCCACAGCTACCACAGAGGTTCTGGCTGCCACATTTTGCATGAGAATTGCTGTCACTTATACAGAGTGTGTATCTAAAATAGTTTTTGTCTATAGTAAAACTCACCAGCTTTGTTATTCTGTACCTTATGTGAATCAGtagaaacctcttttgttgtccACTATATTGATGTCTCTGCAGAGGCATGGGGTTTCTGTCACTTGGGCATCTATATCTAAGAGACCATGAAGGTTTGTATGTTTTTGTAATTAAAGAAGTTATAGATTTCcagaaaaaatcatgtaaaaaaatatagGCTTCCTGTATACTCCCcccattattaatactttgcattagtgtggcacctttttgcaattgaagaaacaatattataattgttttatttgctATAATCCATGGTTAACATTAGGgtgcatttttttcctatatatcaccttattattaacaccttgcattagtatggcacatttgttataattcatgacagaacattttataattgtattattacctatagcccatcatttac

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