Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name NR2F6P1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr25). Each line represents a retrocopy.
Species Choloepus didactylus
Coordinates chr4:83285006-83285189  UCSC
Strand -
Parental Sequence XM_037818173.1
Parental seq. overlap 158 bp
Parental seq. overlap (%) 8.1%
Genomic Region Intragenic (NR2F2)
Retrocopy Summary NR2F6P1, located on chr4:83285006-83285189, is a retrocopy of the parental gene NR2F6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NR2F6
Full Name N/A
Also known as NR2F6
Coordinate chr25:2270861-2280089
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens NR2F6P2
Chimpanzee Pan troglodytes NR2F6P2
Bonobo Pan paniscus NR2F6P2
Orangutan Pongo abelii NR2F6P3
Crab-eating macaque Macaca fascicularis NR2F6P1
Rhesus Macaca mulatta NR2F6P1
Baboon Papio anubis NR2F6P2
Golden snub-nosed monkey Rhinopithecus roxellana NR2F6P3
Marmoset Callithrix jacchus NR2F6P2
Mouse lemur Microcebus murinus NR2F6P1
Mouse Mus musculus Nr2f6P1
Rat Rattus norvegicus Nr2f6P1
Chinese hamster Cricetulus griseus Nr2f6_1P2
Pig Sus scrofa NR2F6P2
Cow Bos taurus NR2F6P1
Sheep Ovis aries NR2F6P2
Dolphin Tursiops truncatus NR2F6P1
Horse Equus caballus NR2F6P1
Dog Canis familiaris LOC102155522P1
Panda Ailuropoda melanoleuca NR2F6P2
Cat Felis catus NR2F6P1
Pale spear-nosed bat Phyllostomus discolor NR2F6P1
Velvety free-tailed bat Molossus molossus NR2F6P1
Greater horseshoe bat Rhinolophus ferrumequinum NR2F6P1
Egyptian rousette Rousettus aegyptiacus NR2F6P1
Gorilla Gorilla gorilla Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NR2F6P1
TGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAGTTCACGTGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCGTGCGGAGGAACCTGAGCTACACGTGCCGCGCCAACCGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAGTACTGCCGCCTCAAAAAGTGCC
>XM_037818173.1
GCCCCCCGCGTCGCGCCCGGCGGCCCGCTACAGTTTGCTGGCCGCCCTCCCCCCCTCGTGCGAGGCAGAGGGCGTCCCGCAAGCACACAGCCGGCGCGCAGCCCGAGCCCGGGCCCGGGTCATGGTCCGCGCGCCCCCGCCGGGGCCCCAGGGCCACCCCGCGCCAGCCCCCGGGGCCCCCGGCCTGCGCCTCTAGCGCGCCACCCCCAGCCCCGGGCCCGGCCCCGCGCACGCGTGGGAAAGTTGGCCTGGAACCGGCCCGACCAGTTCCTCCCCGGCCCGCGGACCGGCCGCAGGAAGTTGCTGCAAAACTTTTCTGGGGGGTGCAGCGGGAGCCCCCCGCGCCCCCGGGCCGGATGCGCGCGGGGTAGCGCCCCCCCGGGCCGCGTGGGGTGCCCGGAGGGAGAAGCACGTCGGGGGCGCCCCGGCCCCGCTGCCCGGGGGCTATGGCCATGGTGACCGGCGGCTGGGGCGGccctggcggcggcggcggcgacacGAACGGCGTGGACAAGGCGGGCGGCTTCCCGCGCGCGGCGGAGGACGACTCGGCCTCGCCCCCCGGCGCCGCCAGCGACGCGGAGCCGGGCGACGAGGAGCGGCCGGGGCTGCCGGTGGACTGCGTGGTGTGCGGGGACAAGTCGAGCGGGAAGCACTACGGCGTCTTCACCTGCGAGGGCTGCAAGAGCTTCTTCAAGCGCAGCATCCGCCGCAACCTCAGCTACACCTGCCGGTCTAACCGTGACTGCCAGATTGACCAGCATCACCGGAACCAGTGTCAGTACTGCCGCCTCAAGAAGTGCTTCCGGGTGGGCATGCGGAAGGAGGCCGTGCAGCGCGGCCGCATCCCGCACTCGCTGCCGGGCGCTGGCGCCGCCCCCTCGGGCAGCCCCCCGGGCTCGGcgctggcggcggcggcgggcgagCTGTTCCCGGGCCCGCCGGTGTCGGAGCTGATCGCGCAGCTGCTGCGGGCCGAGCCCTACCCGGCGGCGGCGGGGCGCTTCGGCGCGGGCGGCGGCGGGGCGGGCGCGGTGCTGGGCATCGACAACGTGTGCGAGCTGGCGGCGCGGCTGCTCTTCAGCACCGTCGAGTGGGCGCGCCACGCGCCCTTCTTCCCCGAGCTGCCGGTGGCCGACCAGGTGGCGCTGCTGCGCCTCAGCTGGAGCGAGCTCTTCGTGCTCAACGCGGCCCAGGCGGCGCTGCCCCTGCACACGGCGCCGCTGCTGGCCGCCGCCGGCCTCCACGCCGCGCCCATGGCCGCCGAGCGCGCCGTGGCCTTCATGGACCAGGTGCGCGCCTTCCAGGAGCAGGTGGACAAGCTGGGCCGCCTGCAGGTGGACGCGGCCGAGTACGGCTGCCTCAAGGCCATCGCGCTCTTCACGCCGGACGCCTGCGGCCTCTCGGACCCGGCCCACGTGGAGAGCCTGCAGGAGAAGGCACAGGTGGCACTCACCGAGTACGTGCGGGCCCAGTACCCGTCACAGCCCCAGCGCTTCGGACGCCTGCTGCTGCGGCTGCCCGCCCTGCGGGCCGTGCCCGCCTCCCTCATCTCCCAGCTCTTTTTCATGCGCCTGGTGGGCAAGACGCCCATCGAGACGCTGATCCGGGACATGCTGCTGTCAGGGAGCACCTTCAGCTGGCCCTACGGCTCCGGCCAGTGACTGGGCTCTCGGGGGGCCCCCGGCCTCTTCTCAGACTCCTCTTTTTTTAAGACTATGAAGTGtttgtcttttctgttttctaaaatgaTCATGAAACCAAAAAGAGACTCACGGTCGGGACTTCGGCCCCTTCACCGCGACGAGGGTGGGGGGGCGCTGGGGGGCCGACCCCCAGGGCAGCCCGGGCCCCCGGTGCCCCAAGCATGCACTCGTGGGGTGGCTGCAGCGGAACCCACCTCGGACACTACAAGACGGATGCGTGGAAGCAAGTAATAAAGATGTTTCTGCCCGCA

Publications

PMID - Link Title