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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC703455P29
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr10:82841895-82842175  UCSC
Strand -
Parental Sequence XM_015139331.2
Parental seq. overlap 185 bp
Parental seq. overlap (%) 20.1%
Genomic Region Intragenic (NCOA3)
Retrocopy Summary LOC703455P29, located on chr10:82841895-82842175, is a retrocopy of the parental gene LOC703455. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC703455
Full Name N/A
Also known as -
Coordinate chr5:148743927-148748962
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS3AP63
Chimpanzee Pan troglodytes LOC461536P44
Bonobo Pan paniscus LOC100975318P43
Gorilla Gorilla gorilla LOC101144197P42
Orangutan Pongo abelii RPS3AP37
Green monkey Chlorocebus sabaeus LOC103236378P2
Crab-eating macaque Macaca fascicularis RPS3AP30
Baboon Papio anubis LOC101003493P41
Mouse lemur Microcebus murinus RPS3AP16
Horse Equus caballus RPS3AP7
Dog Canis familiaris RPS3AP21
Greater horseshoe bat Rhinolophus ferrumequinum RPS3AP69
Gibbon Nomascus leucogenys Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC703455P29
GTGACAAAATATGCTcTTATCTGTTTTGTCTGTTTTGTGTAGGTTTTACAAAGAAATGCAATAATCAGATCTAGGCAATCTCTTATGCTCAGCACCAACAGATATGCCAAATCCCAGTGATGATGGAAGTCGTGACCCAAGAGGTACAGACAAATAGCTTGAAAGAAGTGGGCAATAAACTGATTCCACACAAATCAGGGAAGACATAGAAAAGGCTTGCCC
>XM_015139331.2
AGACGGCGCGCCCCGCCCCGTACGCCTAAGTTCTCGCGCGACTTCCATTTCCGCCTTTTCGGCTCTCTGATCAGCACCATGGCGGTTGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAAGAAAGATTGGTATGATGTGAAAGCACCTGCTATGTTCAATATAAGAAATATTGGAAAGACGCTCGTCACCAGGACCCAAGGAACCAAAATTGCATCTGATGGTCTCAAGGGTCGTGTGTTTGAAGTGAGTCTTGCTGATTTGCAGAATGATGAAGTTGCATTTAGAAAATTCAAGCTGATTACTGAAGATGTTCAGGGCAAAAACTGCCTGACTAACTTCCATGGCATGGATCTTACCCGTGACAAAATGTGTTCCATGGTCAAAAAGTGGCAGACAATGATTGAAGCTCATGTTGATGTCAAGACTACCGATGGTTACTTGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAAAACGCAACAATCAGATACGGAAGACCTCTTATGCTCAGCACCAACAGGTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAAATTGATTCCAGACAGCATTGGAAAAGACATAGAAAAGGCTTGCCAATCTATTTATCCTCTCCATGATGTCTTCGTTAGAAAAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAGCTCATGGAGCTTCATGGTGAAGGCAGTAGTTCTGGAAAAGCCACTGGGGACGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAATCTGTTTAAAGTTCAGACTTCAATTAGTGTCAAATAAAAAGTGCTATTTGTGATG

Publications

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