Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC704104P6
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr13:38759760-38760638  UCSC
Strand -
Parental Sequence XM_015120395.2
Parental seq. overlap 829 bp
Parental seq. overlap (%) 25.9%
Genomic Region Intergenic
Retrocopy Summary LOC704104P6, located on chr13:38759760-38760638, is a retrocopy of the parental gene H3-3B. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name H3-3B
Full Name H3.3 histone B
Also known as H3F3B
Coordinate chr16:72147325-72151161
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus H3F3BP3
Crab-eating macaque Macaca fascicularis H3F3BP6
Baboon Papio anubis LOC101008118P7
Golden snub-nosed monkey Rhinopithecus roxellana LOC104681297P4
Egyptian rousette Rousettus aegyptiacus H3F3AP19
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC704104P6
GCAGAGCGGTTTGGTCATTCATTGGGCTAGTGTCGGTTCTTTGCTCCGCGATTGCGGCTCTTCCTCGGGCAGCGGAAGCGGCGCAGCAGTCGGAGAAGTGACCTAAAACTTCGGCATTGGGTGAAAGAAAATGGCCTGAACTAAGCTCGTAAATCCACCAGTGGGAAAGTGCCCGGCAAACAGCTGGACACGAAAGCCGCCAGGAAAAGCGCCCCCTCTACCGGCAGGGTGAAGAAGCCTCATTGCTATAGGCCCAGGACCCTGGCGCTTCCAGAGATGCGTCCCTATCAGAAGTCGACCCAGCTGCTCATCCGGAAGCTGCCCTTCCAGAGGTTGGTGAGGGAGATCGCGCAGGATTTCAAAATCGACCTGAGGTTTCAGAGCCCGGCCATCCGTGCGCTGCAGGAGGCTAACAAAGCGTACCTGGTGGGTCTGTTCAAAGATACTAATCTGTGTGTCATCCACGCTAAGGGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATCTGGGGAGAGAGAGGTTAAGTGAAGGCAGTTTTTATGGCGTTTTGTAGTAAATTCTGTAAAATACTTTGGTTTAATTTGTGACTTTTTTTCTAAGAAATTGTTTATAATATGTTGCATTTGTACTTAAGTCATTCCATCTTTCACTCAGGATGAATGCGAAAAGTGACTGTTCACAGACCTCAGTGATGTGAGCACTGTTGCTCAGGAGTGACAAGTTGCTAATATGCAGAAGGGATAGGTGATATTTCTTGCTTCTCATGATGCATGTTTCTGTATGTTAATGACTTGTTGGGTAGCTATTAAGGTATTAGAATTGATAAATGTGTACAGGGTCCTTTTCAATAAAACTGGTTATGACTTGAA
>XM_015120395.2
AGGGAACACATTTTATTTTACATCGGAAAATATTTACAAAAAATTTGTTAAAGTAGCCTCTCTGCGTGCATAGCATTCGCTTGATGCCTGTAAAGTTTAGACTCCTGCTCATCCTGATAGAGACCAGTGCAATTCATTTGCATTGACTTTCTATTGCAGAGCTTTGGAACCAAGGGAAGGATCCAAACATAGCTCCATTTTATCCAATCAGAAGGGCCGCTCAGTGCTAAACTCTGATTCGTCCATTCCTCTTTGCATCCATCCAATCATTAGGCGACTTTAACAGCCAATCAGCGGCCTAGATATGCACCAATCATGGAACAGTGCCGAAGCACGGCCTTTGTGTCGGGGGATGTCAGCGCGTCGGCGAAAGCGCCCACCAATAAAAAAAGTCGTTGGTGTATGCAAATAAGGGTTCTATGACGCAGAGACGCAGCGTGAAGCGTGCCTATAAAAACGGAGGCGTCGAGGGGGCTTGGATCGCAGAGCGGTTTGGTCGTTCGTTGGGCTTGTGTCCGTTCTTAGCTCGGCGATTGCGGCTGTTCCTCGGGCAGCGGAAGCGGCGCGGCGGTCGGAGAAGTGGCCTAAAACTTCGGCGTTGGGTGAAAGAAAATGGCCCGAACCAAGCAGACTGCTCGTAAATCCACCGGTGGGAAAGCGCCCCGCAAACAGCTGGCCACAAAAGCCGCCAGGAAAAGCGCTCCCTCTACCGGCGGGGTGAAGAAGCCTCATCGTTACAGGCCCGGGACCGTGGCGCTTCGAGAGATTCGCCGTTATCAGAAGTCGACCGAGCTGCTCATTCGGAAGCTGCCCTTCCAGAGGTTGGTGAGGGAGATCGCTCAGGATTTCAAAACCGACCTGAGGTTTCAGAGCGCGGCCATTGGTGCGCTGCAGGAGGCTAGTGAAGCGTACCTGGTGGGTCTGTTCGAAGATACTAATCTGTGTGCCATCCACGCTAAGAGAGTCACCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGAGAGAGAGCTTAAGTGAAGGCAGTTTTTATGGCGTTTTGTAGTAAATTCTGTAAAATACTTTGGTTTAATTTGTGACTTTTTTTGTAAGAAATTGTTTATAATATGTTGCATTTGTACTTAAGTCATTCCATCTTTCACTCAGGATGAATGCGAAAAGTGACTGTTCACAGACCTCAGTGATGTGAGCACTGTTGCTCAGGAGTGACAAGTTGCTAATATGCAGAAGGGATGGGTGATATTTCTTGCTTCTCATGATGCATGTTTCTGTATGTTAATGACTTGTTGGGTAGCTATTAAGGTACTAGAATTGATAAATGTGTACAGGGTCCTTTTGCAATAAAACTGGTTATGACTTGATCCAAGTGTTTAACAATTGGGGCTGTTAAGTCTGACCATACATCACTGTGATAGAATGTGGGCTTTTTCAAGGGTGAAGATACAAGTCTTAACCACAGTGTAACTTACAGTTTCCTTTaaaaaaaaaaaaaaaaaGTAAACCTGGCAGCTATAGAATACACTATGTGCATTTATAATAGCTATTTTATATATTGTAGTGTCAACATTTTTAAATTAAATGTTTTACATTCACAAGTGGTGGGGAGTCTTGTCATTAAGGTGTGTGTAATTTAGAGTCCAGTTGGTTTTCTTCTGACTGCACTTGTTCTCATAGTAGTAAAATGCTATGCGCATTTATACCTTGCATAAGTCCTCATTCTACCACATGTTATCTAACCCTCTAGCTGATAATGCAAACACTAACTGGGGGATTTTATTTATAAGGGCTCTAGAAAAAAATACAAGTTATTCACACCAGCATCATCTATTAACTAATATTCTGAACTAGTTAGTGCAGCTTTTCATTGTGTTGTGTGGTTGGTCTCATAACTAGGTTGAGTTTTTCTCCTCTGCTAAGAGGAAACAGTACCGAAGTTCTTTTTCTTGTGGCATTTGTATTATAAAAACTTGCTGTGGGGGAGGAGCATAAAGCTCCAGCCCACTGAACCTCTGCCAATTAAGATGGTGTTGGGTTAGGTTACATCTGGTTACTGTCCTGGGAAAATCATTTTTATAGAGATGGCCTTCCAAGTGGTTTTAAAATTTATCTTATTGAAGTTTTTAGGTCAATTATGTATGTTGACTAAATTTACAAATAAACTTGTTTATCCAACTAAGTGTCCAAAACCTAAATTGAATGTGCTAAGTTTTCACATGTCCCATTATCTAGGTCCTTGTATACTAATGTTTTGAGCTTAGTTCAAGTGTTGCTTGGTAGACAAAGGAACCTTTTATTTACAAAGATACTGTAGAAAGCATGTGAACAGCTCTCTGCTTTATTAAGATGCCATAATATTGCCGTATTTGCAGTGTGGGTTAAGACAAACTATCAAGAAGCTTTTCCCCCCTTCCCGTTCCATAGCGTAGAAGCCCGCAGGTGTAGAACTCACTCTTAAAACTTAAGTAGGAAGCCAGTTTTCTTGTGCAATGATGGCCACAAAAGCATAGTATTTGGATGTCAGCGAGACAGCATGAGAGCCAGCAGTCATCAAAGCATTCCTGTTTGAATCTAGCGACTGCTTAACGTTCTGCCGCATTAAAATTGCTTTCTCGAAAGTTTGGGTTAGTTTCAAATTTAAGAGTTTAGAGGGAAGGTAGAGTAGGTATCTTTCAGGTCGTGATAATGAGCTTCTATGAAAGAATGTAATGTAGTGACCCTCTTTTCTATAAGATTCATAATCAGTTCTGGGACAAGCACACTTAAATGGTTCCTCACAGTGTGTTTCAGAGTGAGATTAAGATCAGACGTTGGAATGTGCTATGCTCTGGAGTGTCTGGAAACAAGTACAGAAACCTGGCTATGGTGATGAGTTAGCTTCTGTTTACTACCTGTGACAACCCAAGTGAGTGACACTAGTGAACCTTCTCCCGTAGTCTGCAGGCTGGCATAGAAGGTTCTCGGATTATATTGGGCAGCTTGCAATCTGCCGAAGTAGCAACTTGCCTTTCCACACTTGGCTTGAGCGCTCAACCCAGAAGGCAAAGAGAGCTTTTGGTTGTAGGCAGCTGCCTGTATGGCATATCCCTCGGTAAGGGTAAAGGAGCAGAGGCAAAGGAGAAAAGCAGAAGTTGGAGCTGATGCAGGTATTCTATGCCCTTGATGGATGAGACTAAAATAAAATTTTTGAAGTTAA

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