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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name H3F3AP19
Plot displaying the genomic locations of a retrocopy (in scaffold_m13_p_16) and its respective parental gene (in scaffold_m13_p_18). Each line represents a retrocopy.
Species Rousettus aegyptiacus
Coordinates scaffold_m13_p_16:32698257-32698607  UCSC
Strand +
Parental Sequence H3F3A_x2
Parental seq. overlap 307 bp
Parental seq. overlap (%) 74.7%
Genomic Region Intergenic
Retrocopy Summary H3F3AP19, located on scaffold_m13_p_16:32698257-32698607, is a retrocopy of the parental gene H3F3A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name H3F3A
Full Name N/A
Also known as NULL
Coordinate scaffold_m13_p_18:4119307-4126733
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gibbon Nomascus leucogenys LOC100599068P10
Green monkey Chlorocebus sabaeus H3F3BP3
Crab-eating macaque Macaca fascicularis H3F3BP6
Rhesus Macaca mulatta LOC704104P6
Baboon Papio anubis LOC101008118P7
Golden snub-nosed monkey Rhinopithecus roxellana LOC104681297P4
Marmoset Callithrix jacchus LOC100406796P22
Opossum Monodelphis domestica H3F3AP9
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>H3F3AP19
TGGTGGTAAAGCACCAAGGAAGCAACTGGCTGCAAAAGCCACTCACGAGAGCGAGCCCTCTACTGGAGAAATGAAAAACCTAATTTTTACAGGCCTGGTATTGTGGGTCTCTGAGATCAGACATTATCAGAGGTCCACTGAACTTCTCATTTGCAAAGCTCCCTCTCAGCATGTTGCGAGAAATTGCTTAGGACTTCAAAACAGATCTGTGCTTCCAGACCACAGCTCTTGGTGCTTTGCAGGAGGCAAGTGAGACCTATCTAGTTGGCCTTTTTAAAGATACCAACCTGTGTGCTATTCCTGCCAAACGTGTAACAATTATGCCAAAGACACCCAGCTAGCACGCTGCAT
>H3F3A_x2
ATGGCTCGTACAAAGCAGACTGCCCGCAAATCGACCGGTGGTAAAGCACCGAGGAAGCAACTGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGGCCTGGTACTGTGGCGCTCCGTGAAATTAGACGTTATCAAAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTCAAAACAGATCTGCGCTTCCAGAGTGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAGAACGTGCTTAA

Publications

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