Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MRPL42P3
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr4:153827527-153828005  UCSC
Strand -
Parental Sequence XM_015152447.2
Parental seq. overlap 399 bp
Parental seq. overlap (%) 18.8%
Genomic Region Intergenic
Retrocopy Summary MRPL42P3, located on chr4:153827527-153828005, is a retrocopy of the parental gene MRPL42. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MRPL42
Full Name mitochondrial ribosomal protein L42
Also known as -
Coordinate chr11:93270201-93306065
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MRPL42P2
Chimpanzee Pan troglodytes MRPL42P4
Bonobo Pan paniscus MRPL42P4
Gorilla Gorilla gorilla MRPL42P4
Orangutan Pongo abelii MRPL42P4
Gibbon Nomascus leucogenys MRPL42P4
Green monkey Chlorocebus sabaeus MRPL42P4
Crab-eating macaque Macaca fascicularis MRPL42P3
Baboon Papio anubis MRPL42P4
Golden snub-nosed monkey Rhinopithecus roxellana MRPL42P4
Marmoset Callithrix jacchus MRPL42P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MRPL42P3
TGGTGTGCCTAGAAGCAAATTTTCAAAGCATTTTCTCTTCAAAACATCCTTTTTGAAGATATTTATACCACCTGACAAGCATCTCAACACCCTATGGCTGTAGCAGCAGTAAAATAGATGATAGTAAAGCAAATTGTCTTGAAACATTTATTGCCAATGCAAAATGGAGCTTTATATTGTGTGTGTTATAAATCTATGTATTCTTCTCTACCTGAAGACTATCATTGCAAAGTAGAGCTTGCTGTGACTTCCAATGGCAGGACGTGAGCCTGCTACCACTCTTCTGTGGACATTCCCTATGAACACACAAAACCCATCCTTCAACCAGATTCTGTGCACAATAATGAAGAAATACAAGATCAAGTGCTGAAAACCAGACGGGAAGAAAAACGTGAACACTTTGAGCAAAGACCAATGAGAAAACAACTTAGCAAACGTTCTTTACTGTTACGCACTGTCAGTATCCTCATGGACAGTAC
>XM_015152447.2
ACGGAGACTACATTTCCCAGAATGCCCCGCGGACGGGAGGGCGCGCGCGGCGCTGTTTCTTGGGACCCGGATTGAAACAAGATGGCGGGCTCGTGGTGAGAAGCTGTCAAGGAGTAGAAATTGGTATGCCTAGAAGCAGATGTTAAAAGCAGTTTCTCTTCAGAACATCTTTTTTCATACCACTTGATAAGCATCTTGAAACACCATGGCTGTAGCTGCAGTAAAATGGGTGATGTCAAAGAGAACTATCTTGAAACATTTATTTCCAATCCAAAATGGAGCTTTATATTGTGTTTGTCATAAATCTACGTATTCTCCTCTACCAGATGACTATAATTGCAACGTAGAGCTTGCTCTGACTTCTGATGGCAGGACAATAGTATGCTACCACCCTTCTGTGGACATTCCATATGAACACACAAAACCTGTCCCTCGGCCAGATCCTGTGCATAACAATGAAGAAACACATGATCAAGTGCTGAAAACCAGATTGGAAGAAAAAGTTGAACACCTTGAGGAAGGACCTATGATAGAAAAACTTAGCAAAATGTTCTTTACAACTAAGCACCGTTGGTATCCTCATGGACAGTATCACAGACGTCGTACGAATCTGAATCCTCCAAAAGACAGATGATGCTGAGGTTCCTGGGGGAATCAAAGAGAAATGTGCCTCATTTGCCATTTGAGAAAATGTAGTCTGGTGTATTCACTAATATACAGTAAAGTAATAATGATAAAATATCTTTTCATATATTAGAATGTGTACTTTTATATAAAGTAGTTCTGGATTTGACATTCTTATTTAGAGAAACctattttcttttttttctttttcgattttagtctttcatttATGTACAGTCTCCAAtttacgacttttccatagtgccaaagccatacatattcagtagaatatcaataaattacatgagaaattcaacactttattataaaacgggctttgtgttagataattttgctcaactgtaggctactgtaagtgttctgagcatatttaagacaggctagcattttcaatttacaatattttcaactgatagtaggtttattgggatgtaactctaccataagttgagaaacatctTTTTTTGGGTGTCTACTGTGATTTAAGTATTTTTAATCATCAGCAAAACATTGTTAATAGGGTAAATATGATTAATAAAAAGGTACATAGCTTTCATGAAGGAGATTTTTAAATTGCCTTTGAGAATAAACTCATACGGTCTACCAAGAAAATAAATATTGTAATGTTTCAGTTATCTTCTAGGAAATAATTAAATTAGTGATATTTTAATCAGGTtttactatctgctaggccccttccatccattcttattaaattctcaaaataatcctttgaaggagtataattacattttacagtgacttgaaccctaccaaaaaagtgggagagccaggagccaaactatcaggctccaaagctttttttcagtgcatcacaatgACAAAGGGGTGGTTTCCTTTCACCCAAGAATGCGCTTTCCTGGAAATTTTTCTAGATAGAATATTATGTAATTTGTTTTGAGGGTTTTTTTTTCCTGGCTGTCTTAAAGATTATGCTAGCTTTAGAACACGTGCAAACAGCTGCAGCTCTGTGATTAAAACATTAAGGTCACTAGACTGGTGTTATGATAATGTTAATAGATAATTCTGCTGCCTCTATTAGCTTATATGTGATCCTTAATAGCATTGCTTCCTCTTCAGTTTCTATTTAGGAGGTGAAGAATCTTTTAATAAGGTAGAAAGCTTGCTTTATTTAAATTTGTACTGTAGAATGTTTGTGATACAGTATTTGTAAAATTGATGTGAAAAATAATTTCTCATTCAGTCTATTGTTTGATCTAGTTCTTTTAATAAAGGAACTCTAGTTGAAGTTTCAAGTGGCCAGTGAAGTGTGAGGAATAGTGACTAGGAGAGAGTAAAGGAAATAATAATGTTGACCCTCTGTTACCCAAAGGAAATATTTTTAAGTGGTTTACTTTTTCCATTAATATAAATTTCATTTGGAAAGATTAAAAAAACAAGTTTGATTGAACTTGATAAATCAGAAATATTTACCAGCTTTA

Publications

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