Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name AK3P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_2) and its respective parental gene (in scaffold_m19_p_2). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_2:137113359-137113966  UCSC
Strand -
Parental Sequence AK3_x1
Parental seq. overlap 490 bp
Parental seq. overlap (%) 71.1%
Genomic Region Intragenic (LOC02641)
Retrocopy Summary AK3P1, located on scaffold_m19_p_2:137113359-137113966, is a retrocopy of the parental gene AK3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name AK3
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_2:53264029-53293459
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Cow Bos taurus AK3P1
Sheep Ovis aries AK3P1
Dolphin Tursiops truncatus AK3P1
Horse Equus caballus AK3P2
Dog Canis familiaris AK3P5
Cat Felis catus AK3P1
Velvety free-tailed bat Molossus molossus AK3P1
Greater horseshoe bat Rhinolophus ferrumequinum AK3P1
Sloth Choloepus didactylus AK3P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Panda Ailuropoda melanoleuca Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>AK3P1
GGCTCCGGCAAGCACACCCTGTCATTGCGCATCACCAAACACTTCCAGCTAAAGAGGCTCTCCAGCGGGGACCTGCTCCGAGACAATGTGCTGAGGGACACAGAAATTGGTGTGCTGGCCAACGATTTCATGAGCCAGGGGAAGCTCATCCCGGATGACCTTATGACGCATCTGACACTTCAGGAGTTGAAAAATCTCACTCAGTATAGCTGGCTGTTATGTGGTTTCCCTAGGACTCTCCCACAAGCCAAAGCCCTCGATAGAGTTCACCAGATACACCTGGTGATTAACCTGAATGTGCCCTTTGAGGTCATCATGCAACGCCTCGCTGCTCGCTGGGTGCATCCAGCCAGTGGTCGCGTCTACAACCTTGAATTCAACCCTCCCAAAGTGGACGGTATGGATGATCTGACCGGAGAGCCTCTCGTTAAGCGTGAGGATGATACACCAGTGACGCTTATCAAGAGACTAAAGGCTTATGAAGACCAAACAAAACCTGTTCTGGAACATTACCAGAAAAAGGGGGTGTTGGAAACATTCTCTGGAAGAGAAACCAACAAGCTCTGGCCCTATATACATGCTTGCATGCAAACAAAACTTACACAAAA
>AK3_x1
ATGGGGGCGTCCTCGCGGCTACTGCGCGCGGTGATCATGGGGGCGCCGGGCTCCGGCAAGGGCACCGTGTCGTCGCGCATCACTAAACACTTTGAGCTGAAGCACCTCTCCAGCGGGGATCTGCTCCGAGACAACATGCTTCGGGGCACAGAGATTGGTGTGTTAGCCAAGACTTTCATTGAACAAGGGAAGCTCATTCCAGATGATGTCATGACTCGACTGGCCTTTCATGAGCTGAAAAACCTCACCCAATATAACTGGCTATTGGATGGTTTTCCAAGGACTCTTCCTCAGGCAGAAGCCTTGGATAGAGCTTATCCGATAGATCTAGTGATTAATCTGAACGTGCCCTTTGAAGTCATTAAGCAACGCCTCACTGCTCGCTGGATTCATCCCGCCAGTGGCCGAGTCTACAACATCGAATTCAACCCTCCCAAAAATGTGGGCATTGATGATCTGACCGGAGAGCCTCTCACTCAGCGTGAGGACGACAGACCAGAGACAGTTGTCAAGAGGCTGAAGGCTTACGAAGCTCAAACACAGCCCGTCTTGGAATACTACCAGAAAAAAGGAGTATTGGAAACATTCTCTGGAACCGAAACCAACAAGATCTGGCCCCATGTATATGCCTTCCTACAAACAAAAGTTCCACAAATTAACCAGAAAGCACCAGTTACTCCATGA

Publications

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