Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name AK3P1
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_7) and its respective parental gene (in scaffold_m29_p_12). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_7:22469030-22469266  UCSC
Strand -
Parental Sequence AK3_x1
Parental seq. overlap 190 bp
Parental seq. overlap (%) 27.8%
Genomic Region Intergenic
Retrocopy Summary AK3P1, located on scaffold_m29_p_7:22469030-22469266, is a retrocopy of the parental gene AK3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name AK3
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_12:31991547-32007829
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens AK3P4
Chimpanzee Pan troglodytes AK3P2
Bonobo Pan paniscus AK3P2
Gorilla Gorilla gorilla AK3P2
Orangutan Pongo abelii AK3P2
Gibbon Nomascus leucogenys AK3P1
Cow Bos taurus AK3P1
Sheep Ovis aries AK3P1
Dolphin Tursiops truncatus AK3P1
Horse Equus caballus AK3P2
Dog Canis familiaris AK3P5
Cat Felis catus AK3P1
Pale spear-nosed bat Phyllostomus discolor AK3P1
Velvety free-tailed bat Molossus molossus AK3P1
Sloth Choloepus didactylus AK3P1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Panda Ailuropoda melanoleuca Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>AK3P1
CAAACACTTCAAGCTGAAGAAGTTCTCCAGTGGGGACCTGCTCCAAGACAACATGCTGAGGGGCACAGAAATTGGTGTGCTGGCCTAGGCTCTCAGGGACCTGGGGAAGCTCCTCCGGATGACATCACGTCTCAGCTGACCATTCAGGAGCTGAAAAATCTCAGCCAGGATTGCTGGCTGTTGTGTAGTTTCCATAGGACACTCCCACAAGCCGAAGCCCTGAAGTTTATCAGATAA
>AK3_x1
ATGGGGGCGTCCGGGCGGCTACTGCGCGCCGTGATCATGGGGGCACCGGGCTCCGGCAAGGGCACCGTGTCGTCGCGCATCACCAAACACTTCGAGCTGAAGCACCTCTCCAGCGGGGATCTGCTCCGAAACAACATACTTCGGGGCACAGAAATTGGTGTGTTAGCCAAGACTTTCATTGAACAAGGGAAGCTCATCCCAGATGATGTCATGACTCGGCTGGCCTTTCATGAGCTGAAAAATCTCACCCAATATAACTGGCTGTTGGATGGTTTCCCAAGGACACTTCCCCAGGCAGAAGCCCTGGACAGAGTTTATCAGATAGATACAGTGATTAACTTGAACGTGCCCTTTGAGGTCATTAAGCAGCGCCTCACGGCTCGTTGGATTCATCCATCCAGTGGCCGAGTCTACAACATCGAATTCAACCCTCCCAAAACTGTGGGCATCGATGATCTGACTGGAGAGCCTCTCGTTCAGCGTGAGGATGATAGACCAGAGACGGTTGTCAAGAGGCTGAAAGCTTATGAGGCTCAAACAGAGCCCGTCCTAGAATACTACCGGAAAAAAGGGGTATTGGAAACATTCTCTGGAACAGAAACTAACAAGATCTGGCCCTATGTATATGCTTTCCTGCAAACAAAAGTTCCACAAGTAAACCAGAAAGCATCAGTTACTCCATGA

Publications

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