Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name LOC01363P4
Plot displaying the genomic locations of a retrocopy (in scaffold_m19_p_8) and its respective parental gene (in scaffold_m19_p_13). Each line represents a retrocopy.
Species Phyllostomus discolor
Coordinates scaffold_m19_p_8:844783-846370  UCSC
Strand +
Parental Sequence LOC01363_x3
Parental seq. overlap 1077 bp
Parental seq. overlap (%) 46.2%
Genomic Region Intergenic
Retrocopy Summary LOC01363P4, located on scaffold_m19_p_8:844783-846370, is a retrocopy of the parental gene LOC01363. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC01363
Full Name N/A
Also known as NULL
Coordinate scaffold_m19_p_13:38578050-38581411
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ACTC1P2
Bonobo Pan paniscus ACTG2P6
Gorilla Gorilla gorilla ACTC1P1
Orangutan Pongo abelii LOC100442237P1
Gibbon Nomascus leucogenys ACTC1P1
Green monkey Chlorocebus sabaeus ACTC1P1
Rhesus Macaca mulatta ACTC1P1
Baboon Papio anubis ACTC1P1
Golden snub-nosed monkey Rhinopithecus roxellana ACTC1P1
Marmoset Callithrix jacchus ACTC1P1
Mouse lemur Microcebus murinus ACTC1P1
Rat Rattus norvegicus Actc1P2
Pig Sus scrofa ACTG2P1
Cow Bos taurus ACTC1P1
Sheep Ovis aries ACTA1P1
Dolphin Tursiops truncatus ACTC1P1
Horse Equus caballus ACTC1P1
Dog Canis familiaris ACTC1P1
Panda Ailuropoda melanoleuca ACTC1P1
Cat Felis catus ACTC1P1
Velvety free-tailed bat Molossus molossus ACTA1P2
Greater mouse-eared bat Myotis myotis ACTA1P2
Egyptian rousette Rousettus aegyptiacus ACTA1P1
Sloth Choloepus didactylus ACTA2P1
Chimpanzee Pan troglodytes Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Mouse Mus musculus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC01363P4
CGCGCTCGTCATCGACAATGGCTCCGGCATGTGCAAAGCTGGCTTTGCTGGGGACGACGCCCCCCGGGCCGTGTTCCCCTCCATCGTCGGGCGCCCCCGGCACCAGGGCGTCATGGTGGGCATGGGGCAGAAGGACAGCTACGTGGGCGACGAGGCCCAGAGCAAGCGCGGCATCCTGACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGACGACATGGAGAAAATCTGGCACCACACCTTCTACAACGAGCTCCGCGTGGCCCCCGAGGAGCACCCCGTGCTGCTGACCGAGGCCCCCCTGAACCCCAAGGCCAACCGTGAGAAGATGACTCAGGTAGGCGCCGCCCTGCCGCCGCTGCCCTGCCCACCTTTCCCAAGTCATTTTCCGTTCGGCTTTATTTTCTGAAATTCAAGTATTTCTTTCGATATTTTCAGGGCTCTGTTCCTCTCCTGGCATTTCCTCCCTGAAGTCTCAAGGTTTCTCATTGTGTTTTTGCCTGCTTTCCTTTTCTGTCCTCACACATCACTCTGGGGGCATGCTGGCATGCGGCGTGTGAGCGTGGGGGGGTCCGGGTCTCGCCCCCCCGCTAAGGGCGCCCGTTGCCTCTCGTCCAGATCATGTTCGAGACCTTCAACACGCCCGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCGGGCCGCACCACCGGCATTGTCATGGACTCTGGGGACGGGGTCACCCACACGGTGCCCATCTACGAGGGCTACGCCCTGCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACCGACTACCTCATGAAGATCCTCACGGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGGGAGATCGTGCGTGACATCAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACCGCCGCGTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCCGACGGGCAGGTGATCACCATCGGCAACGAGCGCTTCCGGTGTCCAGAGGCGCTCTTCCAGCCCTCTTTCCTCGGTAGGTGGCGGGGGGCGTGGGGGTGTGGCCCTTCCGCTCCAGAGGGAGGCCCGAGTTAAGGCTGAGCTTCTGTCTGCTAGGCATGGAGTCTTGCGGCATCCACGAGACCACGTTCAACTCCATCATGAAGTGCGACGTGGACATCCGCAAGGACCTGTATGCCAACACGGTGCTGTCCGGGGGGACCACCATGTACCCCGGCATCGCCGACAGGATGCAGAAGGAAATCACGGCCCTGGCCCCCAGCACGATGAAGATCAAGGTGGGTGTGCGCCCGGCCTGAGCCGGCCTGGGCACATGGGGGGTCAGAGTGTCTGGCCTGGCAGGCTGGGCCCCTGTGGTGCCACCCAGGGTCCTCACGGTGTCCCTCTCCCCCCAGATCATCGCGCCTCCCGAGCGCAAGTACTCGGTGTGGATCGGCGGCTCCATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGACGAGTCGGGCCCCTCCATCGTCCACCGCAAATGCTTCTA
>LOC01363_x3
ACTGCCGAGACTTCGTCCACCGGTCAGCACAGGCTTCTCGCCTTCGCCGCTCTTTCGCCTTCGCCAGTCTACTCCACCTCCAGCTCGACATGGATGATGATATTGCTGCGCTCGTGGTCGACAACGGCTCCGGCATGTGCAAGGCCGGCTTCGCGGGCGACGATGCCCCCAGGGCCGTCTTCCCCTCCATCGTGGGGCGCCCCCGGCACCAGGGCGTGATGGTGGGCATGGGTCAGAAAGACTCCTACGTGGGCGATGAGGCCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATCGAACACGGCATTGTCACCAACTGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGTGTGGCCCCCGAGGAGCACCCCGTCCTGCTCACCGAGGCCCCTCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCAGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCTGGCCGCACCACTGGCATTGTGATGGACTCCGGTGACGGGGTGACCCACACAGTGCCCATCTATGAGGGGTACGCCCTCCCCCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACTGACTACCTCATGAAGATCCTCACGGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTGCGTGACATCAAGGAGAAGCTGTGCTACGTCGCCCTGGACTTCGAGCAGGAGATGGCCACCGCTGCGTCCTCTTCTTCCCTGGAGAAGAGCTACGAGCTGCCTGATGGGCAGGTCATCACCATCGGCAATGAGCGGTTCCGCTGCCCTGAGGCTCTCTTCCAGCCTTCTTTCCTGGGTGAGTGAGGCCTCCCTGCCCCCACACCCAGGGCCGCCACTGTGGTGGCCCCGCTGGAAAGCTAAGTTGGGTCTTTCCCTTCAGGCATGGAATCCTGTGGCATCCACGAAACTACCTTCAACTCCATCATGAAGTGTGACGTCGACATCCGTAAGGACCTCTATGCCAACACAGTGCTGTCTGGGGGGACCACCATGTACCCCGGCATCGCCGACAGAATGCAGAAGGAGATCACGGCCCTGGCCCCCAGCACGATGAAGATCAAGATCATCGCACCTCCTGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGACGAGTCTGGCCCCTCCATCGTCCACCGCAAATGCTTCTAGGCGGACTGTTGTTACTCAGTTGGTTACACCCTTTCTTGACAAAAAAAACCTAACTTGCGCGCAGAAAACGAGATGAGATTGGCATGGCtttatttgttttttgtttcttttttttcgtttgtttttttgAAATTTTTTTGGCGCTTGACTCAGGATTTAAAAACTGGAACGGTGAAGGCGACAGCAGTGTGCTCGAAGCGAGCATCCCCAAAGTTCTGCAGTGCGGCCCGGGACTGATCGTACATTGTTCATTTTCTAATAGTCATTCCAAACACCGTGAGATGCATTGTTACAGGAAGTCCCTCGCCGGCCCCAAAGCTGCCCACTTCTCCCTAAGAAGGGCCAGTCTCCGCCCGAGTCCACACAGGGGTGGGTGATAGCGTTGCTTTTGTGTAAATTATGTAATCCAAATTTTTAAATCTTCGCCTTAATACTTGTTCTTTTTGTTTTATTTTGAATGGTCAGCCATCGTGGCCCCCCTTTTTGTCCCCAACTTGACATGTATGAAGGCTTTTTCCGGTCCCCGGGAGCGGGCTGAGAGGTGTGGCGGCAGCCAGGGCTTCCCTGCACACTGACGTGAGACCGATTCAATAAAGTGCACACCTTAAAGG

Publications

PMID - Link Title