| Retrocopy Name | LOC05390P1 |
|
| Species | Phyllostomus discolor | |
| Coordinates | scaffold_m19_p_1:164860290-164860765 UCSC | |
| Strand | + | |
| Parental Sequence | LOC05390_x6 | |
| Parental seq. overlap | 406 bp | |
| Parental seq. overlap (%) | 57.2% | |
| Genomic Region |
Intergenic |
|
| Retrocopy Summary | LOC05390P1, located on scaffold_m19_p_1:164860290-164860765, is a retrocopy of the parental gene LOC05390. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | LOC05390 |
| Full Name | N/A |
| Also known as | NULL |
| Coordinate | scaffold_m19_p_9:68032282-68060348 |
| Strand | - |
| Gene summary | N/A |
| Species | Scientific Name | Retrocopy | |
 |
Human | Homo sapiens | NAA10P1 |
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Chimpanzee | Pan troglodytes | NAA10P1 |
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Bonobo | Pan paniscus | NAA10P1 |
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Gorilla | Gorilla gorilla | NAA10P1 |
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Orangutan | Pongo abelii | NAA10P1 |
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Gibbon | Nomascus leucogenys | NAA10P1 |
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Green monkey | Chlorocebus sabaeus | NAA10P1 |
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Crab-eating macaque | Macaca fascicularis | NAA10P1 |
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Rhesus | Macaca mulatta | NAA10P1 |
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Baboon | Papio anubis | NAA10P1 |
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Golden snub-nosed monkey | Rhinopithecus roxellana | NAA10P1 |
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Pig | Sus scrofa | NAA10P1 |
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Dolphin | Tursiops truncatus | NAA10P1 |
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Horse | Equus caballus | NAA10P1 |
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Dog | Canis familiaris | NAA10P1 |
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Panda | Ailuropoda melanoleuca | NAA10P1 |
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Cat | Felis catus | NAA10P1 |
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Velvety free-tailed bat | Molossus molossus | NAA10P1 |
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Greater mouse-eared bat | Myotis myotis | NAA10P1 |
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Kuhl's pipistrelle | Pipistrellus kuhlii | NAA10P1 |
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Greater horseshoe bat | Rhinolophus ferrumequinum | NAA10P1 |
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Egyptian rousette | Rousettus aegyptiacus | NAA10P1 |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Rat | Rattus norvegicus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
| >LOC05390P1 |
| TATGAACATCCGCAGTGCTAGGCCAAGCGACCTGATGAATATGCAACACTGCAACCTCCTGTGCCTTCCCGAGAACTATCAAATGAAATACTATTTCTACCATGGCCTTTCCTGGCCCCAGCTCTCTTTCGTTGCTGAGGATGAGGATGGGAACATTGTGGGCTACATCCTGGCGAAAATGGAGGAAGACGGAGCGGATGTGCCCCATGGACACATCACCTCCCTGGCGGTGAAGCGTTCACACCGGCGCCTCGGCCTGGCCCAGAAGCTCGTGGACCAGGCCTCCAGGGCCATGATAGAGAACTTCAGCGCCAAGTACGTGTCCCTGCACGTCAGGAAGAGTAATCGGGCGGCCCTGCGCTTGTATTCTGAAACCCTAAATTTCCGGGTTAGCGAGGTGGAACCCAAATACTACGCAGATGGAGAAGATGCTTATGCTATGAAGCGGGATCTCACACAGATGGCAAATGAGCTGA |
| >LOC05390_x6 |
| ATGAACATCCGCAATGCGAGGCCAGAGGACCTGATGAACATGCAGCACTGCAACCTCCTGTGCCTGCCAGAGAACTACCAGATGAAATACTATTTCTACCATGGCCTCTCCTGGCCCCAGCTCTCTTACATCGCTGAGGATGAGAATGGGAAGATTGTGGGGTATGTCCTGGCCAAAATGGAAGAGGACCCAGATGATGTGCCCCATGGACATATCACCTCACTGGCTGTGAAGCGTTCCCACCGACGCCTTGGCCTGGCTCAGAAGCTGATGGACCAGGCCTCCCGAGCCATGATTGAGAACTTCAATGCCAAATATGTTTCCCTGCATGTCAGGAAGAGTAACCGGGCCGCCCTGCACCTCTATTCCAACACCCTCAACTTTCAGATCAGTGAAGTGGAGCCTAAGTACTATGCAGATGGGGAAGATGCGTATGCAATGAAGCGGGATCTCACCCAGATGGCCGATGAGCTGAGGCGGCACCTGGAATTGAAGGAGAAGAGCAGGCACACAGTGCTGGGCGCCATCGAGAACAAGGTGGAAGGCAAGGGCAACTCGCTTCCAGGCTCAGGAGAGCCCTGTCGTGAGGAGAAGGGCCTGGCTGCAGAGGACAGCGGTGGTGACAGCAAGGACCTCAGCGAGGTCAGTGAGACCACAGAGAGCACCGACGTCAAGGACAGCTCAGAGGCCTCCGACTCGGCCTCCTAG |
| PMID - Link | Title |
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