Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name NAA10P1
Plot displaying the genomic locations of a retrocopy (in chr4) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr4:79325401-79325879  UCSC
Coordinates (T2T) chr4:82661186-82661664  UCSC
Coordinates (hg19) chr4:80246555-80247033  UCSC
Strand -
Parental Sequence NM_003491.4
Parental seq. overlap 419 bp
Parental seq. overlap (%) 26.1%
Genomic Region Intergenic
Retrocopy Summary NAA10P1, located on chr4:79325401-79325879, is a retrocopy of the parental gene NAA10. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NAA10
Full Name N-alpha-acetyltransferase 10, NatA catalytic subunit
Also known as ARD1|ARD1A|ARD1P|DXS707|MCOPS1|NATD|OGDNS|TE2|hARD1
Coordinate chrX:153929225-153935037
Strand -
Gene summary N-alpha-acetylation is among the most common post-translational protein modifications in eukaryotic cells. This process involves the transfer of an acetyl group from acetyl-coenzyme A to the alpha-amino group on a nascent polypeptide and is essential for normal cell function. This gene encodes an N-terminal acetyltransferase that functions as the catalytic subunit of the major amino-terminal acetyltransferase A complex. Mutations in this gene are the cause of Ogden syndrome. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jan 2012]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes NAA10P1
Bonobo Pan paniscus NAA10P1
Gorilla Gorilla gorilla NAA10P1
Orangutan Pongo abelii NAA10P1
Gibbon Nomascus leucogenys NAA10P1
Green monkey Chlorocebus sabaeus NAA10P1
Crab-eating macaque Macaca fascicularis NAA10P1
Rhesus Macaca mulatta NAA10P1
Baboon Papio anubis NAA10P1
Golden snub-nosed monkey Rhinopithecus roxellana NAA10P1
Marmoset Callithrix jacchus NAA10P2
Rabbit Oryctolagus cuniculus NAA10P1
Pig Sus scrofa NAA10P1
Cow Bos taurus NAA10P1
Dolphin Tursiops truncatus NAA10P1
Horse Equus caballus NAA10P1
Dog Canis familiaris NAA10P1
Panda Ailuropoda melanoleuca NAA10P1
Cat Felis catus NAA10P1
Pale spear-nosed bat Phyllostomus discolor LOC05390P1
Velvety free-tailed bat Molossus molossus NAA10P1
Greater mouse-eared bat Myotis myotis NAA10P1
Kuhl's pipistrelle Pipistrellus kuhlii NAA10P1
Greater horseshoe bat Rhinolophus ferrumequinum NAA10P1
Egyptian rousette Rousettus aegyptiacus NAA10P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Sheep Ovis aries Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NAA10P1
TTATGAACATCCGCAACGCTCAGCCAGACGACCTGATGAATATGCAACACTGCAACCTCCTTTGCCTTCCTGAGAACTACCAGATGAAATACTATTTATATCATGGCCTTTCCTGGCCCCAGCTTTCTTACATCGCTGAGGATGAGGACGGGAAGATTGTGGGCTATGTTCTGGCCAAAATGGAGGAGGAACCAGATGATGTCCCGCATGGCCATATCACCTCACTGGCCGTGAAGCGTTCACACCGGCGCCTCGGCCTGGCCCAGAAGCTGATGGACCAGGCCTCCAGGGCCATGATAGAGAACTTTAACGCCAAATACGTGTCTCTGCACGTCAGGAAGAGTAACCGGCCAGCCTTGCACCTTTATTCTAACACCCTCAACTTTCAGATTAGTGAGGTGGAACCTAAATACTATGCAGATGGGGAAGATGCTTATGCTATGAAGCGGGATCTCTCGCAGATGGCAGATGAGCTGAGA
>NM_003491.4
ACCGCCCCTTCCGCCGTCGCCCAGCGAGCCCAGCTCCGGTCCCAGCCCCGGCCGTCCCGGCGTCGCTTCGGAGCGCGGCGGCAGCTGACTGCGCCTTCACGATCCGCTGGGACCCGCGAGCCCCGCCGCCGTTATGAACATCCGCAATGCGAGGCCAGAGGACCTAATGAACATGCAGCACTGCAACCTCCTCTGCCTGCCCGAGAACTACCAGATGAAATACTACTTCTACCATGGCCTTTCCTGGCCCCAGCTCTCTTACATTGCTGAGGACGAGAATGGGAAGATTGTGGGGTATGTCCTGGCCAAAATGGAAGAGGACCCAGATGATGTGCCCCATGGACATATCACCTCATTGGCTGTGAAGCGTTCCCACCGGCGCCTCGGTCTGGCTCAGAAACTGATGGACCAGGCCTCTCGAGCCATGATAGAGAACTTCAATGCCAAATATGTCTCCCTGCATGTCAGGAAGAGTAACCGGGCCGCCCTGCACCTCTATTCCAACACCCTCAACTTTCAGATCAGTGAAGTGGAGCCCAAATACTATGCAGATGGGGAGGACGCCTATGCCATGAAGCGGGACCTCACTCAGATGGCCGACGAGCTGAGGCGGCACCTGGAGCTGAAAGAGAAGGGCAGGCACGTGGTGCTGGGTGCCATCGAGAACAAGGTGGAGAGCAAAGGCAATTCACCTCCGAGCTCAGGAGAGGCCTGTCGCGAGGAGAAGGGCCTGGCTGCCGAGGATAGTGGTGGGGACAGCAAGGACCTCAGCGAGGTCAGCGAGACCACAGAGAGCACAGATGTCAAGGACAGCTCAGAGGCCTCCGACTCAGCCTCCTAGAGCCTGCCCCATCCCCTCCTCACCCCACGAGCTTTCACAATAAATTCGCTCCGTGGCACTGGGGAACTTTGTGTGTGAGCGCGCGCACATTTAGAGGGTGTGTTTCTCCAGGTCCTCTGGTGGGGATGTGAGCCTTGGCCTTTTGACCCAGAGCATCCTGCCAGGCCCGAGTACAAGGAAAGAGCTTTGGAGGTGGGACTCCCTAGTCTCATGACCTTCAGCAGCTGTGGCCCCGGGGAAGGAGGCCCTGGACTTATGGGAGAGACCCTGCCTTGGAGGTCTGCTTGGCCACGCTGAATGTGTTTTGTGGCACAAGCCGGGGCTGCTCAGGCTCAAAGCTCAACAGCAGGGCTCCCACTCTTGGTGGCCTTCAGTTCTCTTCCCACCTTCACCTTCAGACTTTCTCTCCCTAATCACACCTGCTTCGGGCTACAGCAGCTCCCCAGCATAcccgtgggctccagatgtggacatccaactgctcattgggcttatctacaaatgtcCTGTCTGAGTAATGACCCAGCCAGATGCCCCATCAACAGTCCTTGAGTCCTCCCTCCCCTGCCACCCTAATGGTCAGTGAGTCCATGATACCTCTTGAGTCTACTCCCTAACCTGAGTTTGCATTTGAAAATAATTTATTTTTAGTACAATTCCCCGCgtttccccattgacattttgtattagttggtgtatttgttattgttgatgcgccaatactgataagttattgtaaactacagcccatggtttacagta

Publications

PMID - Link Title