Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CBX3P5
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_18) and its respective parental gene (in scaffold_m29_p_19). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_18:45000879-45001420  UCSC
Strand -
Parental Sequence CBX3_x2
Parental seq. overlap 462 bp
Parental seq. overlap (%) 82.9%
Genomic Region Intergenic
Retrocopy Summary CBX3P5, located on scaffold_m29_p_18:45000879-45001420, is a retrocopy of the parental gene CBX3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CBX3
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_19:43048096-43059738
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CBX3P2
Chimpanzee Pan troglodytes CBX3P11
Bonobo Pan paniscus CBX3P11
Gorilla Gorilla gorilla CBX3P9
Orangutan Pongo abelii CBX3P10
Gibbon Nomascus leucogenys CBX3P4
Green monkey Chlorocebus sabaeus CBX3P10
Crab-eating macaque Macaca fascicularis CBX3P10
Rhesus Macaca mulatta CBX3P11
Baboon Papio anubis CBX3P11
Golden snub-nosed monkey Rhinopithecus roxellana CBX3P12
Mouse lemur Microcebus murinus CBX3P16
Pig Sus scrofa CBX3P3
Dolphin Tursiops truncatus CBX3P4
Dog Canis familiaris CBX3P8
Cat Felis catus CBX3P10
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Panda Ailuropoda melanoleuca Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CBX3P5
ATGGCTTCCAATAAAACTACATTGCAAAGAATGGGGAATGAACAAACAAAATGGAAAAGAGTAAAAAAGTTGAAGACGTAGAGCCTAAAGATTTTTTAGTGAAAAACATATTGGACCTATGGGTAGTGAATGGAAAGGTAGAGTATTTCCTTAAGTGAAAGAGATGTACAGGTGTGGACAAAACTTGAAAACCTGAAGAAAATTTAGATTATCCTGAGTTAGTTGAAGTATTTCTTAGTTCTTAAAGCTGGTAAAGAAAAAGATGTCACAAAAAGAAAGCCTTTATCTGACAGTGAATCTGATGATAGCAGATCAAAGAAGAAAAAAAATGCTGCCAACAAATCAAGACACTTTCACAGCATTCTTGATCCTGAAGGAATAATTGGTGTCACAGACAGTAGTGGAGAATTAATGTTTCTCATGAAATGGAAAGATGCAGATGAGGCAGACTTGGTGCTGGCAAAGAGGAAAACATGAAATGTTCTCAAATTGTAATTACTTTTTATGAAGAGAGACAAATTTGGCATTCTTGTCCAGAAGAT
>CBX3_x2
ATGGCCTCCAATAAAACTACATTGCAAAAGATGGGAAAGAAACAGAATGGGAAAAGTAAAAAAGTTGAAGAGGCAGAGCCTGAAGAATTTGTGGTGGAAAAAGTACTGGACCGACGTGTGGTGAATGGGAAGGTGGAGTATTTCCTGAAGTGGAAGGGATTCACAGATGCTGATAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAGTTAATTGAAGCATTTCTTAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGTACAAAAAGAAAGTCTTTATCTGACAGTGAGTCTGAAGACAGCAAATCAAAGAAGAAAAGAGATGCTGCTGATAAACCAAGAGGCTTTGCCAGAGGTCTTGATCCTGAACGAATAATTGGTGCCACAGATAGCAGTGGAGAATTAATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCAGATTTGGTGCTGGCAAAAGAGGCAAATATGAAGTGTCCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGACGAAGCCCAATAA

Publications

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