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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SAP30LP2
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_12) and its respective parental gene (in scaffold_m29_p_24). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_12:61016336-61016497  UCSC
Strand +
Parental Sequence SAP30L_x1
Parental seq. overlap 139 bp
Parental seq. overlap (%) 25.3%
Genomic Region Intergenic
Retrocopy Summary SAP30LP2, located on scaffold_m29_p_12:61016336-61016497, is a retrocopy of the parental gene SAP30L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SAP30L
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_24:19295116-19303243
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SAP30LP1
Chimpanzee Pan troglodytes SAP30LP1
Bonobo Pan paniscus SAP30LP1
Gorilla Gorilla gorilla SAP30LP1
Orangutan Pongo abelii SAP30LP1
Gibbon Nomascus leucogenys SAP30LP1
Golden snub-nosed monkey Rhinopithecus roxellana SAP30LP1
Marmoset Callithrix jacchus SAP30LP1
Horse Equus caballus SAP30LP1
Dog Canis familiaris SAP30LP1
Panda Ailuropoda melanoleuca SAP30LP1
Cat Felis catus SAP30LP1
Pale spear-nosed bat Phyllostomus discolor SAP30LP1
Velvety free-tailed bat Molossus molossus SAP30LP2
Egyptian rousette Rousettus aegyptiacus SAP30LP1
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SAP30LP2
GTAAACAACACTATAAGTTGCAGACCAGATCAGGCTTCAACAGGGGCCAGTTAGCAGAAACTCTTAGCTGATACTTCAGGAACATGTCTGAGAATGACAAAGAGACCCTCACCTACTTCATCTACATGGTGAAGAGTCACAGGAGAAGACTGGAGCAGAAAT
>SAP30L_x1
ATGAACGGCTTTAGCACCGAGGAGGACAGCCGCGAAGGGCCCCCTGCCGCCCCGGCCGCTGCCCCGGGCTACGGCCAGAGCTGCTGCCTCATCGAGGACGGCGAGCGCTGCGTCCGGCCCGCGGGCAACGCCTCCTTCAGCAAGAGGGTCCAGAAGAGCATCTCACAGAAGAAACTCAAGCTGGACATCGACAAGAGCGTCAGGCACCTGTATATCTGCGATTTCCACAAAAATTTCATCCAGAGTGTACGAAATAAAAGGAAGAGGAAGACAAGTGACGATGGTGGAGATTCTCCTGAGCACGACACTGACATTCCTGAGGTTGATCTGTTCCAGCTGCAGGTGAACACTCTACGACGTTATAAACGACACTACAAATTGCAGACCAGACCAGGCTTCAATAAGGCCCAGTTAGCAGAAACTGTCAGTCGACACTTCAGGAACATACCTGTGAACGAAAAAGAGACCCTCGCCTACTTCATCTACATGGTGAAGAGTAACAAGAGTAGACTGGACCAGAAATCCGAGGGTGGCAAGCAGCTTGAGTGA

Publications

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