Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SAP30LP1
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chr9:107115778-107116027  UCSC
Coordinates (T2T) chr9:119292068-119292317  UCSC
Coordinates (hg19) chr9:109878059-109878308  UCSC
Strand +
Parental Sequence NM_001131062.2
Parental seq. overlap 212 bp
Parental seq. overlap (%) 3.5%
Genomic Region Intergenic
Retrocopy Summary SAP30LP1, located on chr9:107115778-107116027, is a retrocopy of the parental gene SAP30L. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SAP30L
Full Name SAP30 like
Also known as NS4ATP2
Coordinate chr5:154445997-154461053
Strand +
Gene summary Enables several functions, including non-sequence-specific DNA binding activity, bending; phosphatidylinositol phosphate binding activity; and zinc ion binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in fibrillar center and nucleoplasm. Part of histone deacetylase complex. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Chimpanzee Pan troglodytes SAP30LP1
Bonobo Pan paniscus SAP30LP1
Gorilla Gorilla gorilla SAP30LP1
Orangutan Pongo abelii SAP30LP1
Gibbon Nomascus leucogenys SAP30LP1
Golden snub-nosed monkey Rhinopithecus roxellana SAP30LP1
Marmoset Callithrix jacchus SAP30LP1
Dolphin Tursiops truncatus SAP30LP1
Horse Equus caballus SAP30LP1
Dog Canis familiaris SAP30LP1
Panda Ailuropoda melanoleuca SAP30LP1
Cat Felis catus SAP30LP1
Pale spear-nosed bat Phyllostomus discolor SAP30LP1
Greater horseshoe bat Rhinolophus ferrumequinum SAP30LP2
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SAP30LP1
CACAATTTGCAGACCAGGCCAGGCCTCAATAAGGTGCAGTTAACAGACACTGTCAGCTGACACTTCAGGAACATACCAGGGAATGAAAAGGAGACCCTGGCCTACTTCACATACATGATGAAGAGTAACAAGAAGAGACTGGATTAGAAACTGGAAGATGGTATGTAGCTCCAGTGACGATGAAGCACATCTTAAAGGAATGAAGCAGAATGCACAGGTGATATCTGCTACATTTCAGTCCATAAAGACT
>NM_001131062.2
GTGGTGCGGAGCGTTCGGCGGGCGGCGGCCGGGCGGCCCAGGGGCTGCCGCGGGACTCGGGGCGCAGCCGAGTGGCTGCAGGGGTGGAGTGGGCCGGACGAgccgcggggcccgggtgccgcgggttcgaggccgggccccgCGCGAGGAGGCCGCGCCACCCCGGGGGAGCTGCCCGGCAGCGAGTTTGCCCCGCTGCCGAAAGAAGGCGGGAGCCGGCAGGGGCCTTCGAAACCCCCTGGCAACCCAGGCCCGGAGTCCTTGGGGAGCGGCTGTTTCCTGGGACGCCCTCCCGGACACCCCCGCTGCAGGGTTACGGTTCTGGGCCCCCGGCAGAAGGCTCCTCCGGGTGACCCCCGGCGGGGCCCTGCGAGCCGcgggagccgaccccggggcctcgagccgggaggaagggggcttccggaggcggagggccgggggccgagggagccgggCCTCTCGGACGCGGGGCAGGGCAGCGCCCGGGCTGGAGACGGACTCTGGGACCCTCGGCTGCGGGGGTCTCAGCGACCTGCCCCGCGGCAAGCGCGGCCGCGGAGTGGCCTACCGGGGACCCTCCCCCAGAGGGACCGGCCCGGGGCGGGGAGATGAACGGCTTCAGCACGGAGGAGGACAGCCGCGAAGGGCcccccgccgccccagctgccgccgccccgGGCTACGGCCAGAGCTGCTGCCTCATCGAGGACGGCGAGCGCTGCGTCCGGCCCGCGGGCAACGCCTCCTTCAGCAAGAGGGTCCAGAAGAGCATCTCGCAGAAGAAACTCAAGCTGGACATCGACAAGAGCGTTGATCTGTTCCAGCTGCAGGTGAACACCCTACGACGTTATAAACGACACTACAAGTTGCAGACCAGACCAGGCTTCAATAAGGCCCAGTTAGCAGAAACTGTGAGTCGACACTTCAGGAACATACCTGTGAATGAAAAAGAGACCCTTGCCTACTTCATCTACATGGTGAAGAGTAACAAGAGTAGACTGGACCAGAAATCGGAGGGTGGCAAGCAGCTTGAGTGAGGATGAAGCACATCTTAAAGGAATGAAGTGTAATGCTTGATGCACAGGTGATATCTACTACATTTAAGCCCATAAAGACTGTTAAATATTATTGTAAATAAAAAAGTTTGAATGATGAATACTGTAAATCTTTTTGGTCAGGAGGATTATATTCTCATGATTCAGCATGTGTATAGAAAGACTTTCTTTTACGATAACTCTGGACTAAAAAAATCAGGATCATTAAAAGAATTAAAAACTATGTATTTCAGCATTCAACAAAGCATTAAATCAATTCTACTGGAAATGTGGGATAAGAAATATTTTGGTAATCACCTTATCCACCAGGCTGCCACGTGTGAGCTGTAGCTTGGAATAGCAGCAAGGTGCAATTGGCCATGGAAGTGCATGAGCAGACCCACATCTGGACTTGCATGCTGCCCGCTGGCGACATAGATATCCCGCCCGCTTTGTTGCAAGCTTTGTCATTTATCAGCAGATCAgtttgacactggtccccctcactcaccctgtgccttgtacacagtaggcactcaatcagtaggtattggctaattgaGCTGTCACTAATAGTGCCAGCCTTGTAACATCCGCTTCACACCTCTCATGACTGAGACCTCTGCCATTTCTGTTGCTCACCACTTAACTGCTAGAATGTGGAGGAAATCCTGATGCACCAACAAGGAAGTTTCTGATCAGATAAGGATTTCAGGACAGTTGCATGTGCAAAACTATTCGTTGAGGTTCCAGAAACACTGATATAGAGACCCTCACAGAAGATACGGTCCCTTATGCACCCCACTATGCTTCACTCTTTGGGGTGCAGTTAGATATTATGACTTCAGCCAAGCTTCTTGGTAATAAATGCATTGACACACTGACATATTTAGTAGGTTGGGGCAAGTATTTTTAGAAGTTTTCATCCTAAGTTCACAACCACCATGCAAGCTGCCAGGGGCCATGTGATTCCTGCCCAGAAGTTCAGCTTAGGATTGAAAGTCTGGCTGGCCTTGACTCCCTGGGCTCTGGTCATCAGCAAATCATGAGTTTGGGCAACAAAGGTCAATTCCATCTGATGCTCATTTTTGTGAACAATTTGCCTCCCTCTTAGGGAGAAAGATTGCTAAAATAATTTTTGAAAATTACCTAATTTTTTTGTTGTTCAAAACGTTGAACTCCTCAATCTAATTATATCAGAGCCAAAGTATCCTGTGAAAACAAAGCTTTATATCCAAAAATGTGCTTTTGCAAAATTCTTTAATCTGTGTAATGGAGGGCAGAGGGTATGGGGTAGGAGGGTGGGAGAAAGAAAAGAAAAGAATTTGGATTCTAATTTATGACCATCTTGACATATGGTCAAAGGTGTCATTTTCCTACTCAGTTTCAATTCTGAGTTAATTTCTTAAGCCTTAAATAATAAGAACAATGGACAGCCTGGCCTGGCAGAGAGTTTCACAGATGACTTAATCTGAGCACCATCACAGAGAAGTCAGGACTAAACCCCCTACTGAGCAGGGCGGCGGAGTGTCCAAAGGTCTCAGTTCTGTGGAGCAGAGTACCACGCTTTCTGTGGAATGGGGACAGGGTCACCACGCTCACTAAAATGCAGTATGTTCCATTGCAGCAAAGCTTTCGCCTGTGTTCAAAATGCATGTCTAGCAGATTGCAGCCTTTTAAATTAAATATATATAAATGGTTGTATATAGAATATACTCTGGACTGTGAGGGCATCCTATTTTGGTATGCCTCCTGGCTGTGGATGGCATGTCCAGTGCTCTGTGAGTGTTTTCAGTCATTCACATTCACTATGTGTTTAGAGATTCTCTCCCTGCTTACAGCTGAAGGATGTTGATACAGGCATCAAGAAGGCTGAGGGGCAGATGGGGCCTGCAGGTTAAGGCATTGTTAACTTGCTCCATGGAAATGTCCATATCTTAATGAGTAAAAAAGTGTATTTTTCTGATACGTAAACCAGAATTGTGGGCGTGTAGGTCACATCACTATTTCTTTAGCAGCAAATCTGTTTTCCCAGTTGAGAGAGACAATAGCTTCTGCACAAGAATATATGATGGTAGGATCCATCTGTTCAATTGTGTCTGAAAGAATCTTTATTCCAAAGCGAAACCTGGGGAAATGTTTTACCTTCAGCCAGATGCTGTGTGTGTACTTGGGTCCCTTGTCTTTCCTCTAAGGAGAGGTGCTTGTGGAAAGTGGAGGTTGTGGGCATCTTTTCAACCTTTTCAATCTGACCTTTCAACAGGTCAGGTGAGAGAAAAGACAAAGCTATTTGAACCTATGTTTTTCTTATGTCCAGAAATCTGTTCTTTCATCAAACCACTAAACCACTCGCCTTAGCCTCTTCTGCAGTTTCTGGTGGCTCTATCTGTGGGCAAGGGACTCCTGCCTGTGAGAAGTGGCCAGGCCCTCCAGAGCAACGGGGTCTGGCTTCAGGGAGCAGTGGGGTGTGGGGAAAGCAATGTTCATCTTGGCTGCTCCATTTTTATACCATCCATCAAGGACTCTTGCGCTTCTCTCCACCTGTGACGTAGCAGCATTGCCTTCTTTCCTCTTGGTGCTTCTGGGCAAAACTGGAATTTGAAATCCAGAACTGGCGTTGTCTTCTTAAAGAGTATGGTTCCTGCCTCAGTTCCAGCCTGGTATGGTTCTTTGATATGCCCTGAAGGTTCTCACATGGAAACATCAGTATCCTGCCATTCATGTTGTTTTAAGATGTTTTAAAAACCAATGGACAAACTTCTTGCTTCAAGGAACAAACTCTTAGGTTGGCAACAGCATATAAAAAAAAAGATCACAGCTGAATCTCATGAAAGATTAAAAACCAAAGGATTCAAGACCGGTGTTGTAAAATGAAGAGGAATTTTACTTACATGTTACAGCTGCCAAGTTTTTAGATGTTCCTGTCATAGCTAAATAGTCACTGCTAGCCTTTCAGAGAACAGATAGTAACAATTGTTTGCAGCTGCAGTGTTGCATCTAATTTTGGTGTTTAGGCTTTTTATTTTGTGGGAAGCTTTTTGTTAATATCCTGCAGGGCAACTGCCTGTTGGGAGGGAGAGGATGGAAGAAGGAGCTTACTCTGGGGGCCTTGCCTATTGAGGGAGGCTGTTGCCCAGAGCAGTTGCTTCATGGAAGTCATCCAAAGGCGCTCTCAGTCATtacaatgacaggatctcaaagttgggaaagggctgttaagtcatccagtctagtctccacataggtgctgacattctgcctacaaccatcccaccaaggggttgagcagtctggacttaaacacctccgaggacagagaacccactacctcgtggagaagcctgttctttgtaaacctctggcttttctatgttctctgtaatttccatcttagtctctgccccatgggggccacatgggacaagtTATTTTTGGCAAAGCACCTAATTGCTGGCACTGTCCCAAAGCATAGCGTTTGCCTTTTGGAAAGAAACAATGCTAGGACATGGACACTTTGGTACACTGTCCTTACCCCTGAGTATTAGTCCACTCAGTTCCTTGTTGGAGAATGTTGAGAAAACCCTACTGGCTGGCTTGTTTCTGCCAAAGCTTGGGGAGAGGAGAGGGGGATGAGAAGATGTTAGCAGCCTGCTAAACCTCAGACAGATGAGGACTCAGTTCTGTGCTTGCCCCACAAAAACGGATGCTCACATCATCAGGAAATTGTTCAGCTGGAGGATTTATAACTTCGTTGCTTTGCATGAAGTTTAAAGTTTTCATGGTTGCCCAGGGCTTGTACCTTAGATTCCTGTAAGGACTTTGCACTGTTTTTGCTGAGAAAACAACGCTTCAGGACTTAAGGTCTAAGCGTCAGAGAAGTGCCGTATTTTCAAGGTGGAAAGTCTGTTAAGCTTGCTGTTgtccaatcatccgtttttagagatggggaaactaaaactcaaaaagatgtgcctgaggtcatatggcattatcagaaccaACCTCTGGCCCTCTTGACCTGTCTAGCATTCTTTCTTTCTGACCTATAGGATGACTCTAATTCAGTCTAAATCGGCTGCCCTCAGATTCTTGAGAACTTAAAATTGAGCAGAAATTCCCAAGGCCAACCTAGCTCTCAGGGACCAACCTGCAGAACTCAAGATTGAGCGAAATGTTTAGGCCAGTTGAGTTTTGCAAAATGAGTGGTAAGGGAAAACAGATCTAGCCTGTTATTTAAAACCAGGGTTCAAAAGCCCTATTGGGAGAGGTAGTATTGTCCTAGCATTTAAATTCTCATGAAATGTGCTTGGTCTGTGATCTCTTGGTCAGATATCTGCCTTCCAGGCGATCCTTTGAGGTTGTGTAATTCAGCTGGCCCTGGCTCCTGGTCCCTGTTACTGAGCTGGGCAGTCGAACCGAAGGGCAGATGAGCTCAAGATCATGCCTTGGGAAGCATGGTGCTCTAGGGGTGCCTTTTTATTCCTTTCATTGTATTATAGACTGTTTCCAAGTTTATGGTTAGAAATGGTAAAGTGGGTCTGGTGTTTTGAGGTAGAACCCAGCCTAGGGCAAGATATGAACTGTTCTTGAGGTAGAAATGTCTACAGTCAGTTGTTTCATCTAGCTTGCATCTTAAAACACAAACCCTTCAGTTGCTTTCACTTAATGCACACATTTGCCAATGACAGAGGGTTATACAGGATCCTTCTTTTACATTTCTATTGTCTGCTACGCTCATCAGAGTATATTTTGGGGTACAAGGTTTTGGGGGTTTTTTTTCCCATTTTGTAACTGCCTTATTGAAAAGTAAGTGCCCTTCCATTCCAGGCCTCCTCATATTGTACTTGTTTCCTGCCAAATCTGGGGGATCATTTGTATTTTAACTTCGTAATCTATGGCTCTGTACTGTTGAAAGGCTCTCAATTCTGTGGGGTCTCCTTAGTATGTATGTGACTTTTCATGTTGCAATATCACACGATGGGATGGCCCGACTTTTGCTCTTAATAAATAATCTGAATGAGTAAGAGA

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