Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ZXDCP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m29_p_1) and its respective parental gene (in scaffold_m29_p_18). Each line represents a retrocopy.
Species Rhinolophus ferrumequinum
Coordinates scaffold_m29_p_1:5022763-5023615  UCSC
Strand +
Parental Sequence ZXDC_x2
Parental seq. overlap 735 bp
Parental seq. overlap (%) 46.3%
Genomic Region Intergenic
Retrocopy Summary ZXDCP1, located on scaffold_m29_p_1:5022763-5023615, is a retrocopy of the parental gene ZXDC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZXDC
Full Name N/A
Also known as NULL
Coordinate scaffold_m29_p_18:56357841-56406876
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ZXDCP1
Bonobo Pan paniscus ZXDCP1
Gibbon Nomascus leucogenys ZXDCP1
Mouse lemur Microcebus murinus LOC105859550P1
Mouse Mus musculus ZxdcP1
Dolphin Tursiops truncatus ZXDCP1
Velvety free-tailed bat Molossus molossus ZXDCP1
Egyptian rousette Rousettus aegyptiacus ZXDCP1
Chimpanzee Pan troglodytes Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ZXDCP1
GTTCGCCAAGAAGCACCAGCTGAAGGTGCACCTGCTGACGCACAGCAGCAGCCAGGGCCAGCGGCCCTTCAAGTGCCCCCTGGGCGGCTGCGGCTGGACGTTCACCACCTCGTACAAGCTCAAGCGACACCTGCAGTCGCACGACAAGCTGCGGCCCTTCGGCTGCCCGGCCGAGGGCTGCGGCAAGAGCTTCACCACCGTGTACAACCTCAAGGCGCACATGAAGGGCCACGAGCAGGAGAACTCGTTCAAATGCGAGGTGTGCGAGGAGAGCTTCCCCACGCAGGCCAAGCTCAGCGCGCACCAGCGCAGCCACTTCGAGCCCGAGAGGCCCTACCAGTGCGCGTTTTCCGGCTGCAAGAAGACGTTCATCACGGTGAGCGCCCTGTTCTCCCACAACCGCGCCCACTTCAGGGAGCAGGAACTCTTCTCCTGCTCCTTTCCCGGCTGCAGCAAACAGTACGACAAGGCCTGTCGGCTGAAAATCCACCTGCGGAGCCACACGGGCGAGAGACCTTTCCTTTGTGACTTTGACGGCTGCGGCTGGAACTTCACCAGCATGTCCAAGCTCTTAAGGCACAAAAGGAAGCACGACGACGACCGCAGGTTCACGTGCCCGGTGGAGGGCTGTGGCAAATCGTTCACGAGGGCCGAGCACCTGAAAGGCCACAGCATCACCCACCTGGGCACAAAGCCTTTTGTGTGCCCCGTGGAAGGCTGCTGCGCCAGGTTCTCGGCGCGCAGCAGTCTGTACATTCACTCCAAGAAGCACGTGCAGGATGTGGACACCTGGAAGAGCCGCTGCCCTGTCTCCACTTGTAACAAACTCTTCACGTCCAAGCACAGCATGAAG
>ZXDC_x2
ATGGACCTCCCCGCGCTGCTCGCAGCTCGGAGCCCGCGCGGAGCCCAACATggcggcggcggcggccccggcggACTCTGCCGAGGCCCGGGGCCGCCGCCCAATCCGAGTCCCGCGCGCCGCCGCCTGCTGCTGCTGCGGGGTCCCGAAGATGgcgggtcggggccgggacgaggggaggcccgggcggcggctgcgggccccgggccgAGCCCACCGCCCCTCGAGGACGGCGGAGAGTCCTTCGTGGTACTGCTGGAAGTACCGCGCAGCGCCGCTGCCGAGGCCCCCGAGCGGCGGGAAGCTGAGTCTGACTTCGGCACGAGCCCCGCCGGCGGCCCCCAGCAGGGCCCCAGCGGTTCGGCCGCAGCCCCGGGACCCAGCGCGGCCCTCGCGGGCACAGTCACCATCAGCAGTCAAGACTTGCTGGTTCGCTTCGACCACGGCGTCTTCACGCTGGCGGCCGCGCCGCCGCCGCCCGGCCCACCCGCGCCGCCGGGCGACGAGGCCGCCAGCCCGGCCGAGGGCCGCCGCGGGCCCCCGGCCCCCGGCCCCAGCGCACCCGGATACCGGTGTCCCGAACCGCAGTGTACGCTCTCCTTCGCCAAGAAGCACCAGCTCAAAGTGCACCTGCTGACGCACGGCAGCAGCCAGGGCCGGCGGCCCTTCAAATGTCCCCTGGACGGCTGCGGCTGGGCCTTCACCACCTCCTACAAGCTTAAGCGGCACCTGCAGTCTCACGACAAGCTGCGGCCTTTCGACTGCCCGGTGGGCGGCTGCGGCAAGAAGTTCACCACCGTGTACAACCTCAAGGCGCACATGAAGGGACACGAGCAGGAGAATCTGTTCAAGTGTGAGGTGTGCGCCGAGCGCTTCCCCACGCATGCCAAGCTCAGCTCCCACCAGCGCAGCCACTTCGAGCCCGAGCGGCCCTACAAGTGTGACTTTCCCGGCTGCGAGAAGACCTTTATCACGGTGAGTGCTCTGTTTTCCCATAACCGTGCCCACTTCAGGGAACAGGAACTGTTTTCCTGCTCCTTTCCTGGCTGCAGCAAACAATATGACAAAGCCTGTCGCCTGAAAATTCACCTGAGAAGTCATACAGGTGAAAGACCTTTTATTTGTGACTCTGACAGTTGTGGCTGGACCTTTACCAGCATGTCTAAACTCCTGAGGCACAAAAGGAAACACGATGATGACCGGAGATTTACCTGCCCTGTTGAAGGCTGTGGGAAGTCCTTCACAAGAGCGGAGCATCTGAAAGGCCACAGCATCACCCACCTTGGCACAAAGCCATTCGAGTGTCCCGTGGAAGGGTGCTGTGCCAGATTCTCTGCTCGTAGCAGTCTCTATATTCACTCCAAGAAACACCTGCAGGATGTGGCTGCTCCAAAAAGCCGTTGCCCAGTCTCCAGCTGTAACAGACTCTTCACCTCCAAGCACAGCATGAAGGCGCATGTGGTCAGGCAGCACAGCCGGCACCCAGATATCTTCCCTCAGCTAGGAGCTCCAAGTTCTCTTCCACTCAGCAGTGAACTTGGCAGCCCAGGACAAAGAAAGTGGGGGCTCAGCAAGAACTGA

Publications

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