Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name ZXDCP1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Homo sapiens
Coordinates (hg38) chrX:57592864-57593754  UCSC
Coordinates (T2T) chrX:56891673-56892563  UCSC
Coordinates (hg19) chrX:57619297-57620187  UCSC
Strand +
Parental Sequence NM_001040653.4
Parental seq. overlap 755 bp
Parental seq. overlap (%) 15.8%
Genomic Region Intergenic
Retrocopy Summary ZXDCP1, located on chrX:57592864-57593754, is a retrocopy of the parental gene ZXDC. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ZXDC
Full Name ZXD family zinc finger C
Also known as ZXDL
Coordinate chr3:126437348-126475938
Strand -
Gene summary Enables C2H2 zinc finger domain binding activity; LRR domain binding activity; and transcription coactivator activity. Involved in positive regulation of transcription, DNA-templated. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Bonobo Pan paniscus ZXDCP1
Gibbon Nomascus leucogenys ZXDCP1
Mouse lemur Microcebus murinus LOC105859550P1
Mouse Mus musculus ZxdcP1
Chinese hamster Cricetulus griseus Zxdc_1P1
Dolphin Tursiops truncatus ZXDCP1
Velvety free-tailed bat Molossus molossus ZXDCP1
Greater horseshoe bat Rhinolophus ferrumequinum ZXDCP1
Egyptian rousette Rousettus aegyptiacus ZXDCP1
Sloth Choloepus didactylus ZXDCP2
Chimpanzee Pan troglodytes Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Rat Rattus norvegicus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ZXDCP1
GTGCCCCGAGGCGCAGTGCGGGCAAACCTTCGCCAAGAAGCACCAGCTGAAGGTGCACCTGCTGACGCACAGCAGCAGCCAGGGCCAGAGGCCCTTCAAATGCCCCCTGGGTGGCTGCGGCTGGACCTTCACCACCTCTTACAAGCTCAAGAGGCACCTGCAGTCGCACGACAAACTGCGGCCCTTTGGCTGCCCGGCAGAGGGCTGTGGCAAGAGCTTCACCACAGTGTACAACCTCAAGGCGCACATGAAGGGCCATGAGCAGGAGAACTCATTCAAATGCGAGGTGTGCGAGGAGAGCTTCCCCACGCAGGCCAAACTCAGCGCCCACCAGCGCAGCCACTTCGAACCGGAGAGGCCTTACCAGTGCGCGTTTTCTGGCTGCAAGAAGACATTTATCACAGTGAGTGCTCTGTTTTCCCATAACCGCGCCCATTTCAGGGAACAGGAACTGTTTTCCTGCTCTTTTCCTGGCTGCAGCAAACAATATGACAAGGCTTGTAGGCTGAAAATTCACCTGCGGAGTCACACCGGCGAGAGACCTTTCCTTTGTGACTTTGATGGCTGTGGCTGGAACTTCACTAGCATGTCCAAACTCTTAAGGCACAAAAGAAAGCACGACGATGACCGGAGGTTCATGTGCCCTGTGGAAGGCTGTGGGAAATCTTTCACGAGGGCGGAACATCTGAAAGGCCACAGCATAACCCACCTGGGCACAAAGCCTTTCGTGTGTCCTGTGGCAGGCTGCTGTGCCAGGTTCTCTGCTCGCAGTAGCCTCTACATTCACTCCAAGAAACACCTGCAGGATGTGGACACTTGGAAAAGCCGTTGCCCGATCTCCTCTTGTAATAAACTCTTCACATCCAAGCACAGCATGAAGACGCACATGGT
>NM_001040653.4
GCTCCGACGCCGTCGCTGGGACCAAGATGGACCTCCCGGCGCTGCTCCCCGCCCCGACTGCGCGCGGAGGGCAACATGGCGGCGgccccggcccgctccgccgagccccagcgccgctcggcgcgagccccgcgcgccgccgccTGCTACTGGTGCGGGGCCCTGAAGATGGCGGGCCCGGGGCGCGGCCCGGGGAGGCCTCCGGGCCAAGCCCGCCGCCCGCCGAGGACGACAGCGACGGCGACTCTTTCTTGGTGCTGCTGGAAGTGCCGCACGGCGGCGCTGCCGCCGAGGCTGCCGGATCACAGGAGGCCGAGCCTGGCTCCCGTGTCAACCTGGCGAGCCGCCCCGAGCAGGGCCCCAGCGGCCCGGCCGCCCCCCCCGGCCCTGGCGTAGCCCCGGCGGGCGCCGTCACCATCAGCAGCCAGGACCTGCTGGTGCGTCTCGACCGCGGCGTCCTCGCGCTGTCTGCGCCGCCCGGCCCCGCAACCGCGGGCGCCGCCGCTCCCCGCCGCGCGCCCCAGGCCTCCGGCCCCAGCACGCCCGGCTACCGCTGCCCCGAGCCGCAGTGCGCGCTGGCCTTCGCCAAGAAGCACCAGCTCAAGGTGCACCTGCTCACGCACGGCGGCGGTCAGGGCCGGCGGCCCTTCAAGTGCCCACTGGAGGGCTGTGGTTGGGCCTTCACAACGTCCTACAAGCTCAAGCGGCACCTGCAGTCGCACGACAAGCTGCGGCCCTTCGGCTGTCCAGTGGGCGGCTGTGGCAAGAAGTTCACTACGGTCTATAACCTCAAGGCGCACATGAAGGGCCACGAGCAGGAGAGCCTGTTCAAGTGCGAGGTGTGCGCCGAGCGCTTCCCCACGCACGCCAAGCTCAGCTCCCACCAGCGCAGCCACTTCGAGCCCGAGCGCCCTTACAAGTGTGACTTTCCCGGCTGTGAGAAGACATTTATCACAGTGAGTGCCCTGTTTTCCCATAACCGAGCCCACTTCAGGGAACAAGAGCTCTTTTCCTGCTCCTTTCCTGGGTGCAGCAAGCAGTATGATAAAGCCTGTCGGCTGAAAATTCACCTGCGGAGCCATACAGGTGAAAGACCATTTATTTGTGACTCTGACAGCTGTGGCTGGACCTTCACCAGCATGTCCAAACTTCTAAGGCACAGAAGGAAACATGACGATGACCGGAGGTTTACCTGCCCTGTCGAGGGCTGTGGGAAATCATTCACCAGAGCAGAGCATCTGAAAGGCCACAGCATAACCCACCTAGGCACAAAGCCGTTCGAGTGTCCTGTGGAAGGATGTTGCGCGAGGTTCTCCGCTCGTAGCAGTCTGTACATTCACTCTAAGAAACACGTGCAGGATGTGGGTGCTCCGAAAAGCCGTTGCCCAGTTTCTACCTGCAACAGACTCTTCACCTCCAAGCACAGCATGAAGGCGCACATGGTCAGACAGCACAGCCGGCGCCAAGATCTCTTACCTCAGCTAGAAGCTCCGAGTTCTCTTACTCCCAGCAGTGAACTCAGCAGCCCAGGCCAAAGTGAGCTCACTAACATGGATCTTGCTGCACTCTTCTCTGACACACCTGCCAATGCTAGTGGTTCTGCAGGTGGGTCGGATGAGGCTCTGAACTCCGGAATCCTGACTATTGACGTCACTTCTGTGAGCTCCTCTCTGGGAGGGAACCTCCCTGCTAATAATAGCTCCCTAGGGCCGATGGAACCCCTGGTCCTGGTGGCCCACAGTGATATTCCCCCAAGCCTGGACAGCCCTCTGGTTCTCGGGACAGCAGCCACGGTTCTGCAGCAGGGCAGCTTCAGTGTGGATGACGTGCAGACTGTGAGTGCAGGAGCATTAGGCTGTCTGGTGGCTCTGCCCATGAAGAACTTGAGTGACGACCCACTGGCTTTGACCTCCAATAGTAACTTAGCAGCACATATCACCACACCGACCTCTTCGAGCACCCCCCGAGAAAATGCCAGTGTCCCGGAACTGCTGGCTCCAATCAAGGTGGAGCCGGACTCGCCTTCTCGCCCAGGAGCAGTTGGGCAGCAGGAAGGAAGCCATGGGCTGCCCcagtccacgttgcccagtccagcagagcagcacggtgcccaggacacagagctcagtgcaGGCACTGGCAACTTCTATTTGGTATGAAGCACTCTATTCAGTCACCACCATATAGGTCACTTCTCTCATACTCGGTCTTGAGGATATTCTGGATTAATCCTTTCTATGCAGACGTTTCTGGTTTACAAAAGGACgcagccctggactacaagtctggaactgacaagttcttatgaccttgacaaatcaccttaacccatctgagccttaaattctcatttatttcctgcataaggagatttggctaaatgctttctgaggtcctttggagtcctgtggctccatggtAATGTGCTCCTTTCCTTGAAGATTGGGGGTTTTGTAATGTTGAGATACTTTGCCTCTATGCTTGTCAGCTCATGACCAGTCCTAGAAGAGGAGTCGAGACATAAGCCACCTTCAGAGGTTCAATGGAAACTTTAAAACCATACCAAACTCTTTTTTAAAATTAGAATTAACAAGAAAAAAAAAAAGGGTGGGGTTTATGAGCCTTAGTTCTTGGAGGATTATAAGAGTACTTCCCCAGTTTTGAGGCTGGACAGttaatatactttatatcaattatacatttaatataatttaatttaaaataatttaaAGATTCTTAGGAGATAGTCTGACTTTCCTGACCTAGATGGGAATGATCAGATAGGGATTTTTTTTGTGGCACAGGCTAAATTTGATGGTGACATTTATATTGTTGAGAATGTTACATCTTATTTTACCACAACTTTTAAAAAATGTTACATCTTTTGCAGTAGGATCAGTTGTGAGGCACATAGTAGCTGAGGCTCCATGGAGCCACCTTTCATTTCTTTCAGTCAGAGAGGAGGACAGTCTCTGTCTCTGCATTTCTGGTGTCTTGCTTGTCGGTGGCAGAGCCATGCTTGCCGGCATTTGCTTAGGCGGCCATAGTAGTTGCTAAGTGTACAGGTGACTGGGCAGGGATGGGAGGTGGCCACAGGTCAGAGACAAGTGCTCAGTCAGTCCCTGGTGCCAGGACTGTGTGCCTCGGTGCCTTGGGAAATGGAAGCTCCCTGGTGCAGCTGCAGCTGTGGGTGGAGGTAGAgaagccagcaagaccttggtcttaaccccgtgttcattttcttgctagctgtgtgacgttgggctacctcgcttctctgagTAcaaatggtgtgtggtgaatgggtcccaggtatgctacgagctttgagggctgctctttttctcttcatagcgataagtgttaaactgtctttcttaggaaacgttcacagacttgcaacagctgatgtcctctgagtactgtctgactccctcaggcaagttcctgaattcagtaccatcattattatttttgtgtaagactttgacaaagtatagcccctgccaccagagcagcctgtacagtgggtctctaaggtgggacctgccccgggcctgccATGCACGTGTGTGAAACAGCGTGAAAAGTGTCGCGGTAAggtgaccctgggttacccaggcaaggctcggtgtttgtttcagaaagcagagaagtatgtaattgattttaaaagtttctgtttaaaatatttggctatgttttagactatgaaggaatgaactttgcttctctggataagaaagtcacataCATTGTTCCAGCTCCAAGTTTGTTCGGCCCTCGCCACAAGTGGATGTAGCGTTTGGCCCTTTGTGTGCCTTGCTGGTGACTCTGGTTTTGGGAGCTCGGATATGTCCCAGAAGCAGGCTTATGGCACTTCTGTAGCTCCCTTGCTACCCTTCCTTTGTGTCTAGATAAGTGACTGACATGCTTTTCTTTGGTCTCAGGAAAGTGGGGGCTCAGCAAGAACTGATTACCGAGCCATTCAACTAGCCAAGGAAAAAAAGCAGAGAGGAGCGGGGAGCAATGCAGGTGAGGCCGTGTGTGCTGCAGCCGGACGAGCAAGGGCCTGAGGGTTCTCTGTCACTGTTACTGGCAGAAGAAACACAGCAGGTGTTTCTGTGCTCTTGGTTTTACTTTTCTGTTCAGAATACCCTTTTATCAACTCCTTAGTTTTATTTGAACTTAAGGGAAAAAATTAGTAACAAAATTCCCAGCATCAGTATGAACATATTTTATTTGCCTAAACAAGCTTTGTGAAAGTTAAGCGTTCAAACACCAGTGTCAGTTACCTGGAAGGCTACTAAGGTAAATAAGCAAAGCAGGCCAGTTGTCAGGAAAGCAGAGATTGTGCCTGGTGCTGAATGGCCTTGGGGCCTGATCTTGGCATGGCAGAGACCTGGGGACTGCCACTGTCCCCAGGTACGTGTACATGGAGCCAAACTGTGTGTCCTGTGGCATTGTCAGAGTTATGTTGAAATCTTATTTGAAAATGTTAGCAACTTACTTGCATTTTTAAAGACCAAACAAGAGCTGGTAACCTATGGCCTCAAGCATCTGTCCTTCCTAAAAATGGAATAGTGGGATGTAGTGCTTAATGGAAACTGCTAAATCTTTTTCTAAAAACTAACAGTGGATTTTTAAAATATAttgttttttgtgtatttcatttgtcctttgtatttATCTAAAAGGGTTGATATGATTTTATATCTTGCTCTCTATTCCTAATAGTATTATGACTTCTTATTTAAAATAAATAACAATTGCCGGTTTTCTGTTAA

Publications

PMID - Link Title