Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CHP1P1
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Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_2) and its respective parental gene (in scaffold_m16_p_1). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_2:137001089-137001611  UCSC
Strand +
Parental Sequence CHP1_x1
Parental seq. overlap 436 bp
Parental seq. overlap (%) 59.9%
Genomic Region Intragenic (NHS)
Retrocopy Summary CHP1P1, located on scaffold_m16_p_2:137001089-137001611, is a retrocopy of the parental gene CHP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CHP1
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_1:180269115-180324882
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CHP1P3
Chimpanzee Pan troglodytes CHP1P3
Bonobo Pan paniscus CHP1P3
Gorilla Gorilla gorilla CHP1P3
Orangutan Pongo abelii CHP1P3
Gibbon Nomascus leucogenys CHP1P4
Green monkey Chlorocebus sabaeus CHP1P3
Crab-eating macaque Macaca fascicularis CHP1P3
Rhesus Macaca mulatta CHP1P3
Baboon Papio anubis CHP1P3
Golden snub-nosed monkey Rhinopithecus roxellana CHP1P3
Marmoset Callithrix jacchus CHP1P2
Mouse lemur Microcebus murinus CHP1P1
Rabbit Oryctolagus cuniculus CHP1P1
Cow Bos taurus CHP1P1
Sheep Ovis aries CHP1P1
Horse Equus caballus CHP1P1
Dog Canis familiaris CHP1P1
Panda Ailuropoda melanoleuca CHP1P1
Cat Felis catus CHP1P1
Pale spear-nosed bat Phyllostomus discolor CHP1P1
Greater horseshoe bat Rhinolophus ferrumequinum CHP1P1
Egyptian rousette Rousettus aegyptiacus CHP1P1
Sloth Choloepus didactylus CHP1P3
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Pig Sus scrofa Without Homology
Dolphin Tursiops truncatus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CHP1P1
TGGGAAGATTTCTAATGGATTTCTGAACTTGTCATCAACCCACTGGGGGGCCAGCTCATCAGTGCCTTCTTCCCAGAGGGAGACGATCAGGTAAACTTCCATGGATTCATAAAAACTTTGGCTCATTTCCGACCCATTGAAGATAGTGCAAAGAGCGAAGATAAGAATAGACCAGAACCACTCAACAGCTGAAGCAACAAACTACTTTTCTTTTTGACTATATGATTTGGATAAAGATTAAAAGATCCCCTATGATAAGTTGTTCCAGGTGCTGTGCATGATGGTTGGAGTGAATATCTCAGATGAGCAAATGAGCAGCATCACAGACAGGACCATCTAGGAGGCTGATTAGGATGGGGATGGCACCATATCTTTTGCAGTTTGTTAAAGTTTTGGAGAAGGTCAATATAGAATAGAAAATGAGTATCTGGTTTCCTGACTAAATGGCTGAGACCAAACTGTTCCTGCTCTCTAATATTTAAGAACTGGAACTTGAGAGTCTTCCTATCTACCAGCCCCACCT
>CHP1_x1
ggaaaccccttgcctacaaagcagtctagttcccactaatctactttctttctctctctggacatttttatataaatggaatcatacaCCGGGAAGATTTCCAGAGGATTCCAGAACTTGCCATCAACCCATTGGGGGACCGGATCATCAATGCCTTCTTTCCAGAGGGAGAGGACCAAGTAAACTTTCGTGGATTCATGAGAACTTTGGCTCATTTCCGACCCATTGAGGATAATGAAAAGAGTAAAGATGTGAATGGACCAGAACCACTCAACAGCCGAAGCAACAAACTGCACTTTGCTTTTCGACTATATGATTTGGATAAAGATGACAAGATCTCCCGCGATGAGCTGTTACAGGTGCTACGAATGATGGTTGGAGTAAATATCTCCGATGAACAGCTGGGCAGCATCGCAGACAGGACCATCCAGGAGGCTGATCAAGATGGAGACAGCGCCATATCTTTCACAGAATTTGTTAAGGTTTTGGAGAAAGTGGACGTTGAACAGAAAATGAGCATCCGATTTCTTCACTAAAGGACTGAAACTAAACTGGTCCTTGTTTTCTAGTATTTAAGAACTGGAACATGGGAGGCCGCCTGTCCACCAGCCCCACCTTCACCCTATCATTTGCCTTCTCCCAAAGTACTACTGTTGCATGACAACCCCCAATATGTTCTGCCAACATAAACCTGCTTTTGGTGTATAAACAGGGCATTACAGAATGCT

Publications

PMID - Link Title
No publications available for this retrocopy