| Retrocopy Name | CHP1P3 |
|
| Species | Homo sapiens | |
| Coordinates (hg38) | chrX:17705018-17705691 UCSC | |
| Coordinates (T2T) | chrX:17287631-17288304 UCSC | |
| Coordinates (hg19) | chrX:17723138-17723811 UCSC | |
| Strand | - | |
| Parental Sequence | NM_007236.5 | |
| Parental seq. overlap | 556 bp | |
| Parental seq. overlap (%) | 17.3% | |
| Genomic Region |
Intragenic (NHS) |
|
| Retrocopy Summary | CHP1P3, located on chrX:17705018-17705691, is a retrocopy of the parental gene CHP1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
| Gene Name | CHP1 |
| Full Name | calcineurin like EF-hand protein 1 |
| Also known as | CHP|SLC9A1BP|SPAX9|Sid470p|p22|p24 |
| Coordinate | chr15:41231156-41281887 |
| Strand | + |
| Gene summary | This gene encodes a phosphoprotein that binds to the Na+/H+ exchanger NHE1. This protein serves as an essential cofactor which supports the physiological activity of NHE family members and may play a role in the mitogenic regulation of NHE1. The protein shares similarity with calcineurin B and calmodulin and it is also known to be an endogenous inhibitor of calcineurin activity. [provided by RefSeq, Jul 2008] |
| Species | Scientific Name | Retrocopy | |
 |
Chimpanzee | Pan troglodytes | CHP1P3 |
 |
Bonobo | Pan paniscus | CHP1P3 |
 |
Gorilla | Gorilla gorilla | CHP1P3 |
 |
Orangutan | Pongo abelii | CHP1P3 |
 |
Gibbon | Nomascus leucogenys | CHP1P4 |
 |
Green monkey | Chlorocebus sabaeus | CHP1P3 |
 |
Crab-eating macaque | Macaca fascicularis | CHP1P3 |
 |
Rhesus | Macaca mulatta | CHP1P3 |
 |
Baboon | Papio anubis | CHP1P3 |
 |
Golden snub-nosed monkey | Rhinopithecus roxellana | CHP1P3 |
 |
Marmoset | Callithrix jacchus | CHP1P2 |
 |
Rabbit | Oryctolagus cuniculus | CHP1P1 |
 |
Horse | Equus caballus | CHP1P1 |
 |
Dog | Canis familiaris | CHP1P1 |
 |
Panda | Ailuropoda melanoleuca | CHP1P1 |
 |
Cat | Felis catus | CHP1P1 |
 |
Pale spear-nosed bat | Phyllostomus discolor | CHP1P1 |
 |
Velvety free-tailed bat | Molossus molossus | CHP1P1 |
 |
Greater horseshoe bat | Rhinolophus ferrumequinum | CHP1P1 |
 |
Egyptian rousette | Rousettus aegyptiacus | CHP1P1 |
 |
Sloth | Choloepus didactylus | CHP1P3 |
 |
Mouse lemur | Microcebus murinus | Without Homology |
 |
Mouse | Mus musculus | Without Homology |
 |
Rat | Rattus norvegicus | Without Homology |
 |
Chinese hamster | Cricetulus griseus | Without Homology |
 |
Pig | Sus scrofa | Without Homology |
 |
Cow | Bos taurus | Without Homology |
 |
Sheep | Ovis aries | Without Homology |
 |
Dolphin | Tursiops truncatus | Without Homology |
 |
Greater mouse-eared bat | Myotis myotis | Without Homology |
 |
Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
 |
Tasmanian Devil | Sarcophilus harrisii | Without Homology |
 |
Opossum | Monodelphis domestica | Without Homology |
 |
Platypus | Ornithorhynchus anatinus | Without Homology |
 |
Chicken | Gallus gallus | Without Homology |
 |
Turkey | Meleagris gallopavo | Without Homology |
 |
Zebra Finch | Taeniopygia guttata | Without Homology |
 |
Budgerigar | Melopsittacus undulatus | Without Homology |
 |
Painted Turtle | Chrysemys picta | Without Homology |
 |
Lizard | Anolis Carolinensis | Without Homology |
 |
Frog | Xenopus tropicalis | Without Homology |
 |
Zebrafish | Danio rerio | Without Homology |
 |
Drosophila | Drosophila melanogaster | Without Homology |
| >CHP1P3 |
| GAGGACCAGCTGAACTTCTGTGGATTCATAAGAACCTTGGCTCATTTCTGACCCATTGATGATTACGAAAGGAGCAAAGATGTGAATGGACCAGAACCACTTGACAGCTGAAGCAGCAAACTTCACTTTGGTTTTTAATTATATGATTTGGATAGATGTTAGACAACATCTCCTGCAGTGAGCTGTTACAGGAGCTATGCATAATGGTCAGAGGGAATAACTCAGATGAGCGACTGGGCATCATCACAGACAGAACCATCCAGGAGGCTAACTGGGATGGGGATGATGCAATATCTTTCACAGGATGTTTTAAGTTTTTGGAGAAGGTGGACATAGAACAGAAAATGAACATCTGATTTCTTGACTGAAGAACTGAGACTAAACTGTTCCATGCTCTTTAGTATTTAACAACTGGAACTTGAGAGTCCTCCTGTCCAACAGCCCCACCTCTACCCCATCATGCCCCGTCTCCCAAAATGCTACTATTGATGCATGACGACTCCAGATGTGCTCGGTCAACACAAGCCTGCCTTTGATGCAAACAGGGCATTACAGAATAGTACACCCAGTCTATTTCTCTTCAGCCTGAATTCACTGGTTCTCCATTTCTAAATGTTATCTCCACTCTTCTGCTGCTGACGCCACATATCCATCCAGTCTGAGAAAGTGAGAGG |
| >NM_007236.5 |
| AGTGGAAACACTGCCCTCTCCCTTCTTGACCCCTAGCccttccttccctccctccttccctccTGTCGCCGTCTCTTCTGGCGCCGCTGCTCCCGGAGGAGCTCCCGGCACGGCGATGGGTTCTCGGGCCTCCACGTTACTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACCGGCTTTTCCCACAGTCAAATCACTCGCCTCTACAGCCGGTTCACCAGCCTGGACAAAGGAGAGAATGGGACTCTCAGCCGGGAAGATTTCCAGAGGATTCCAGAACTTGCCATCAACCCACTGGGGGACCGGATCATCAATGCCTTCTTTCCAGAGGGAGAGGACCAGGTAAACTTCCGTGGATTCATGCGAACTTTGGCTCATTTCCGCCCCATTGAGGATAATGAAAAGAGCAAAGATGTGAATGGACCCGAACCACTCAACAGCCGAAGCAACAAACTGCACTTTGCTTTTCGACTATATGATTTGGATAAAGATGAAAAGATCTCCCGTGATGAGCTGTTACAGGTGCTACGCATGATGGTCGGAGTAAATATCTCAGATGAGCAGCTGGGCAGCATCGCAGACAGGACCATTCAGGAGGCTGATCAGGATGGGGACAGTGCCATATCTTTCACAGAATTTGTTAAGGTTTTGGAGAAGGTGGATGTAGAACAGAAAATGAGCATCCGATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGTCTAGTATTTAAGAACTGGAACTTGAAAGTCCTCCTTCTACCAACTCCACCTCCACCCCCTCATTCCCCTTCTCCCAAAGTACTACTGCTGTTGCATGACAACCCCAAATATGTTCTGTCAACACAAACCTGCCTTTGGTGTATAAACAGGGCATTACAGAATGGTACACCCTATATATTTCTGTTCAGTATCCATTCACTAGTTCTTCATTTATAAATATCATCTTCCCCATTCTGCTGCTGAATGCCACACATCCATCCAGTCTGAGAAAGTGAGAGAGGCAATCATGCCAAGAACAAGCCAGCAAAGCTCTTTCACCAGATGTAGACTGTAGCCCTGCTGCCTTCCCTCCAGCGAGTCTGCCAGCATGCTTCTTCATCCTTTTTATATGTTCTTTGCTTCCTACTTCCCTGTCTTCCAACATACTGTTCACTTACTCTGGCAGTCTTTCTGCTTTTCATTAAGCCTCAAAATCTCCTCTGTTCTACTTGGCACCACAAGCTATGTCCTATATATGTATTTCTGACTTGGCAGGATAGTTCAGGGGTCTGGCAGTTTTTATTTACCTTCATTATTAAATGGGCCTCTGGGATGTTGCCTCTTCAGGAGCTTTTTGGTAATCAATACTTCTCTCAGAAGTATGAGACCATCCTCTGCACTCTGCTCTGTCATCAAAGGCTGCTGGGTGGAGATACCCTTTTTGAAAGGTGGCCTTGGTGAGAGGTATGGAGCCAAGTCTTCTAGGTTGCTTGCCCACATCACTCTATCTCTGGCCTCTGATTCTCAACTTTGTACCTGTGTGGCTCCTCTTGTTAGTGCAATGTTGACTGTTGAAAAAGCAGCAGTATGCTTACAGGTTTGCTTAGTTTGGGGACACCGTTACCACCAGAATGGCTGCTCTGACAATATGCCTAGGGACTTTCTCATGGCTTTTATTTAATAAGGAGGCTGGGCACCCTATAAAGCCTCATGCATTCACACCTTTGCAGCATGGTTTATGCCTCAGTGTTATGTGCACTGGAATGTTTTCCACTTCACATTTCCAAGTAGAAATATTAGTGTTACGGAAGTGCCTAATATCCCAGTCCAAAtttttttttttttttttttttttttttgagacagagtcttgctctgtcacccaggctggagtgcagtggtgcgatcgctcactgcaacctcagcctcctggatttaagtgattctcctgcctcagcctcccaagtagctgggattacaggtgtgcaccaccatgcccggctaattttttgtatttttagtggagacagggtttcaccatgttggccaggctggtctcgaactcctgacctcgtgatccgcctgcctcagcctcccaaagtgctgggattacaggtgtgagccaccacgcctggccCCAGTCCAAAATATTTAAAGATTGTTTCCTTAGTGTCTTGAAGTTTTGCACAAAAttcttttttttgagatggagtctcactctgtcacccaggctggagtgcagtggcgtgatcttggctcactgcaacctctgcctcctgggttcaagcaattctcccacctcagcctcccaagtagctgggattacagacgtgtgccaccatacctgggtaatttttgcatttttagtggagagggagtttcaccatgttggccaggttggtcttgaactcctgacctcaggtgatcctcctgcctcggcctcccaaagtgctgggattacaggcatgagccaccgtgctcagccGCAAAATTCTTTATGAATTTTACACTTGGCAAATGTTAATGACGGAAGCCATAGTCTGCTCCTAATACATGTCCAAAGCATTGACTGTTGTGTCATTAGCTGCCTGGTTACATTAGCTCCCTGGCTTCTTGTTTAGACCACTGCTAATCCCTTAAAAACAAGAGGTCTGGCACTAGTAGCACAACCTAAGGTGGCATTACAGATCTTTGAGCGAGCCACAGCAACTTTTCTGCCAAGTCAGCTTAGTTTAGACTTCAGTGAATCAGGCTATTGCTATCCTAATGTATGTCTCTATGAGTGTATTTAGCCACACATCTGCCCTTGGTTGACTTTCTGACTCAttgcttgcttgcttgtttccttgcttTGGAAAACTATTGAAGATTGCTAAAAAATACCACTGCAAAGTGATGGAAAAGGGTGGAGAACAGGGGAGTAGCCAGGCTGGATGGCTCAAATATAAATGAATGAGGAATTCTTTATGAAGTATCAGTCAGATTTTATGATTAAGTGATGTAATATAGGAATTATGTAAAAGGGAAGAATGTCTGATACTGATCTATTAGAGAGGTACTTTAGAGGCTTCTTGATTGGCATAAAGTTCCTAAGGTTATAGATTTTCCCCCCTTTTGGCTGTATAGCAAAGTGTTTTAATCCACGGTTGTGCCTTATTGTTCCATTAAAATTGTATCTTCGATCCATCAATAAATACTTGTGGTTGAAACAAAA |
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