Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GKP1
Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_1) and its respective parental gene (in scaffold_m16_p_2). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_1:58609176-58610818  UCSC
Strand -
Parental Sequence GK_x2
Parental seq. overlap 1409 bp
Parental seq. overlap (%) 84.4%
Genomic Region Intergenic
Retrocopy Summary GKP1, located on scaffold_m16_p_1:58609176-58610818, is a retrocopy of the parental gene GK. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GK
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_2:124233061-124309057
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens GK2
Chimpanzee Pan troglodytes GKP3
Bonobo Pan paniscus GKP3
Gorilla Gorilla gorilla GKP2
Orangutan Pongo abelii GKP2
Gibbon Nomascus leucogenys GKP2
Green monkey Chlorocebus sabaeus GKP2
Crab-eating macaque Macaca fascicularis GKP2
Rhesus Macaca mulatta GKP2
Golden snub-nosed monkey Rhinopithecus roxellana GKP1
Marmoset Callithrix jacchus GKP1
Pig Sus scrofa GKP1
Cow Bos taurus GKP2
Sheep Ovis aries GKP2
Horse Equus caballus GKP1
Dog Canis familiaris GKP4
Panda Ailuropoda melanoleuca GKP2
Cat Felis catus GKP1
Pale spear-nosed bat Phyllostomus discolor GKP2
Greater mouse-eared bat Myotis myotis GKP1
Kuhl's pipistrelle Pipistrellus kuhlii GKP2
Greater horseshoe bat Rhinolophus ferrumequinum GKP2
Egyptian rousette Rousettus aegyptiacus GKP1
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Dolphin Tursiops truncatus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GKP1
AAGAAGGCAGTTGTGGGGCCGTTGGTGGGGGCAGTGGTCGAGGGGACTAACTCCTCCCGCTTTCTGGTTTTCAATCCAAAAACAGCGGAGCTCCTTAGTCACCAACAAGTAGAATTTACACAAGAGTATCCAAAAGAAGGATGGGTGGAACAAAACCCGAAGGAAATCATCCAGTCCGTCTACGAGTGCATAGAGAGAACGTGTGCGCAGCTTAGCGAACTGAGTGTTGATGTAGCCGACATAAAAGCCATCGGTGTCAGCAACCAGAGGGAAACCACTCTGATTTGGGACAAGTTCACCGGAGAGCCGCTCTACAATGCGGTGGCGTGGCTCGACCTCCGCACCCAGTCCACCGTGGAGACGCTCAGTAAGAAAATCCCGGGAAATAACAACTTCGTCAAGTCCAAGACAGGCCTTCCCCTTAGCACTTACTTCAGTGCCGTGAAAGTTCGCTGGCTTCTTGACAATGTGACAACAGTTCAAAAGGCTGTTGAGGAAGGGAGAGCTCTTTTCGGGACCATTGATTCGTGGCTCATCTGGAATATGACAGGAGGAGTCAATGGAGGTGTCCACTGCACCGATGTGACAAATGCAAGCAGGACGATGCTGTTCAACATTCATTCTTTGGAATGGGATAAAGAGCTCTGCGACTTTTTTGAAATTCCGATGAGCATTCTTCCAAATGTCTGCAGTTCTTCTGAGATCTATGGCAAAATGAAAGCTGGGTCCTTAGAAGATGTACCAATATCTGGGTGTTTGGGGGACCAGTCTGCTGCACTAGTGGGACAAATGTGCTTCCAGGAAGGACAAGCCAAAAACACGTATGGAACAGGTTGTTTCTTACTGTGTAATACAGGTCGTAAGTGTGTATTTTCTGATCATGGTCTTCTGACCACAGTGGCTTACAAATTAGGTAAAGACAAGCCAGTATGCTATGCGCTGGAAGGTTCTGTTGCTATAGCTGGTGCTGTTATTCGCTGGCTCAAAGACAATCTCGGAATTATAGAGACCTCAGAAGAAATTGAAAAACTTGCTATAGAAGCAGGTTCTTCTTTTGGCTGCTACTTCATCCCAGCCTTTTCGGGGTTATATGCACCTTATTGGGATCCCAGTGCAAGAGGGATCATCTGTGGTCTCACTCAGTTCACCAATAAAAGTCATATTGCTTTTGCTGCATTAGAAGCTGTTTGTTTCCAAACTCGAGAGATTTTGGATGCCATGAACCGCGACTGTGGAATTCCACTCAGGCATTTGCAGGTAGATGGAAAAATGACCAACAACAAAATTCTTATGCAACTACAAGCAGACATTCTGCACATTCCAGTAATAAAACCCATTATGCCTGAAATAACTGCTCTGGGAGCCGCCATGGCAGCAGGAGCTGCAAAAGGGGTGGACATTTGGAGTCTTGAACCTGAGGATCTGTCAGACATTGTAATGGAACGGATTGAGCCACAGATAAATGCCATGGAAAGTGAAAGTCGTTATTCTACATGGAAGAAAGCTATGCAGAAGTCAATGGGTTGGGTTACAACTCAGTCTACTGAAAATGGTGATTCTCCTGCCTTCTCTAGTCTGCCCTTGGGTTTTTTCATAGTGAGTAGCATGATAATACTAATTGGAGCAAGGTACATCTCAGGTAT
>GK_x2
ATGGCAGCCACGAAGAAAGCAGTTTTGGGGCCGTTGGTGGGGGCAGTGGACCAGGGCACCAGCTCGACGCGCTTTTTGGTTTTCAATTCAAAAACAGCAGAACTACTTAGTCATCATCAAGTGGAAATAAAACAAGAGTTTCCAAGAGAAGGATGGGTGGAACAGGACCCTAAGGAAATTCTGATGTCTGTCTATGAGTGTATAGAGAAAACATGTGAGAAACTTGAACAGCTCAATATTGACATTTCCAACATAAAAGCTATTGGTGTCAGTAACCAGAGGGAAACCACTGTAGTCTGGGACAAGATAACTGGAGAACCTCTCTACAATGCTGTAGTGTGGCTTGATCTAAGAACCCAGTCTACTGTTGAGAATCTTAGTAAAAGAATTCCAGGAAATAATAACTTTGTCAAGTCCAAGACAGGCCTTCCACTTAGCACTTACTTCAGTGCTGTGAAAGTTCGTTGGCTTCTGGATAATGTGAGAAACGTTCAAAAGGCTGTTGAAGAAGATAGAGCTCTTTTTGGGACTATTGATTCGTGGCTTATTTGGTGCTTGACAGGAGGAACCAATGGAGGCGTCCACTGTACGGATGTAACAAATGCAAGCAGGACGATGCTTTTCAATATTCATTCTTTGGAATGGGATAAAGAGCTCTGCGAATTTTTTGAAATTCCAATGAAAATTCTTCCAAATGTCCGGAGTTCTTCTGAGATCTATGGCTTAATGAAAGCTGGGGCCTTGGAAGGTGTGCCAATATCTGGGTGTTTGGGGGACCAGTCTGCTGCACTGGTGGGACAAATGTGTTTCCGAGATGGACAAGCCAAAAATACGTATGGAACAGGCTGTTTCTTACTATGTAACACAGGCCGTAAGTGTGTATTTTCTGAACATGGCCTTCTGACCACAGTGGCTTACAAACTTGGCAGAGACAAACCAGTATATTATGCACTAGAAGGTTCTGTAGCTATAGCCGGTGCTGTTATTCGCTGGCTAAGAGACAATCTTGGAATTATAAACAGTTCAGATGAAATTGAAAAACTTGCTAAAGAAGTAGGTACTTCTTATGGCTGCTATTTCGTCCCAGCGTTTTCAGGGTTATATGCACCTTACTGGGAGCCCAGTGCAAGAGGGATCATCTGTGGCCTCACTCAGTTCACCAATAAATGCCATATTGCTTTTGCTGCATTAGAAGCTGTATGTTTCCAAACCCGAGAGATTTTGGATGCCATGAACCGCGACTGTGGAATTCCACTCAGTCATCTGCAGGTAGACGGAGGAATGACCAACAACAAAATTCTTATGCAGCTACAAGCAGACATTCTGTATATCCCAGTAGTGAAGCCCTCCATGCCGGAAACAACCGCCCTGGGAGCTGCCATGGCAGCAGGGGCTGCAGAAGGAGTTGGTGTTTGGAGTCTGGAACCCGAGGACCTGTCAGCCGTCACAATGGAGCGGTTTGAACCCCAGATCAATGCTGAGGAAAGTGAAATTCGTTATTCTACCTGGAAGAAAGCTGTGATGAAGTCAATGGGCTGGGTTACAACTGAGTCTTCTGAAAGTGGTGACCCTAGTATCTTCTGTAGTCTACCCTTGGGCTTTTTTATAATGAGTAGCATGGTAATGTTAATCGGAGCAAGGTACATCTCAGGTAACGCATAA

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