Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GKP2
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr5:54318573-54320337  UCSC
Strand +
Parental Sequence XM_015127125.2
Parental seq. overlap 1559 bp
Parental seq. overlap (%) 34.9%
Genomic Region Intergenic
Retrocopy Summary GKP2, located on chr5:54318573-54320337, is a retrocopy of the parental gene GK. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GK
Full Name N/A
Also known as GK3P|GKP3
Coordinate chrX:30507982-30588500
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens GK2
Chimpanzee Pan troglodytes GKP3
Bonobo Pan paniscus GKP3
Gorilla Gorilla gorilla GKP2
Orangutan Pongo abelii GKP2
Gibbon Nomascus leucogenys GKP2
Green monkey Chlorocebus sabaeus GKP2
Crab-eating macaque Macaca fascicularis GKP2
Golden snub-nosed monkey Rhinopithecus roxellana GKP1
Marmoset Callithrix jacchus GKP1
Mouse Mus musculus GkP1
Rat Rattus norvegicus GkP1
Pig Sus scrofa GKP1
Cow Bos taurus GKP2
Sheep Ovis aries GKP2
Horse Equus caballus GKP1
Dog Canis familiaris GKP4
Panda Ailuropoda melanoleuca GKP2
Cat Felis catus GKP1
Pale spear-nosed bat Phyllostomus discolor GKP2
Velvety free-tailed bat Molossus molossus GKP1
Greater mouse-eared bat Myotis myotis GKP1
Kuhl's pipistrelle Pipistrellus kuhlii GKP2
Greater horseshoe bat Rhinolophus ferrumequinum GKP2
Egyptian rousette Rousettus aegyptiacus GKP1
Baboon Papio anubis Without Homology
Mouse lemur Microcebus murinus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Dolphin Tursiops truncatus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>GKP2
GGGGCCGTTGGTGGGAGCGGTGGTCCAGGGCACCAACTCCACTCGCTTTCTGGTTTTCAGTTCAAAAACAGCGGAACTACTTAGTCATCATAAAGTGGAATTAACACAAGAGTTCCCAAAAGAAGGATGGGTGGAACAAGACCCTAAGGAAATTCTTCAGTCTGTCTATGAGTGTATAGCGAGAACGTGTGAGAAACTTGACGAAATGAATATTGATATATCCAACATAAAAGCTGTTGGTATCAGCAATCAGAGGGAAACCACTGTAATCTGGGACAAGTTAACTGGAGAGCCTCTCTACAACGCTGTGGTGTGGCTTGATCTAAGAACCCAGACTACTGTTGAGGATCTTAGTAAAAAAATTCCAGGAAATAGTAACTTCGTCAAGTCTAAGACAGGCCTTCCACTTAGCACTTACTTCAGTGCAGTAAAACTTCGTTGGATGCTTGACAATGTGAGACATGTCCAAAAGGCTGTTGAAGAAGGTAGAGCTCTTTTTGGTACCATTGATTCATGGCTTATCTGGAGTTTGACAGGAGGAGTTAATGGAGGTGTGCATTGTACAGATGTAACAAATGCAAGCAGGACAATGCTTTTTAATATCCATTCTTTGGAATGGGATAAAGAGCTCTGTGACTTTTTTGAAATTCCAATGGACCTTCTTCCAAATGTCTTCAGTTCTTCTGAGATCTATGGCCTAATTAAAACTGGGGCCCTGGAAGGTGTGCCAATATCTGGGTGTTTGGGGGACCAGTGTGCTGCATTAGTAGGACAAATGTGCTTCCAGGAAGGACAAGCCAAAAACACCTATGGAACAGGTTGCTTCTTACTATGTAATACAGGTCGTAAATGTGTGTTTTCTGAACATGGCCTTCTGACCACAATAGCTTACAAATTAGGCAAAGAGAAGCCAGCATATTATGCACTGGAAGGTTCTGTTGCTATAGCGGGTGCTGTTATTCGTTGGCTAAGAGACAATCTTGGAATTATAGAGACCTCAGGAGACATTGAAAAACTTGCTAAAGAAGTAGGAACTTCTTATGGCTGTTACTTTGTCCCAGCCTTTTCAGGGTTATATGCACCTTATTGGGAACCCAGTGCAAGAGGAATACTCTGTGGTCTTACTCAGTTTACCAATAAATGTCATATTGCTTTTGCTGCATTAGAAGCTGTTTGTTTCCAAACCCGAGAGATTTTGGAAGCCATGAACCGTGACTGTGGAATTCCACTTCGTCATTTGCAGGTAGATGGAGGAATGACCAACAACAAAGTTCTTATGCAACTACAAGCAGATATTCTGCATATTCCAGTAATAAAACCCTTTATGCCTGAAACAACTGCACTAGGAGCTGCCATGGCAGCAGGAGCTGCAGAGGGAGTAAGCGTTTGGAGCCTTGAACCCCAGGCTTTGTCGGTTCTCAGGATGGAACGATTTGAACCACAGATCCAGGCCACAGAAAGTGAAATTCGTTATGCCACATGGAAGAAAGCTGTAATGAAGTCAATGGGTTGGGTTACCAGTCAGTCTCCTGAAAGTGGTGATCCTTCTATCTTCTCTAGTATGCCTTTGGGATTTTTTATAGTGAGTAGCATGGTAATGCTAATTGGAGCAAGATATATCTCAGGTATGCCGTAATAATACCAGCCAGGGAGTCCCAAGGTGTAAACATTTTACATAATGAAAGCATACAGCAGTTCTGCCTCTGAATATAATGACACTATTATAGACTCTGATTTTGTTTATAAACCACTTGCTACATGACCC
>XM_015127125.2
GCGCGGTCCGAGCGTTCAGCGGACGCGCGCGGCCTCGCTCTTTGGACTCGTCACCCGCCCCTCCCCCTCCCGCCGCCGTCACCCAGGAAACCGGCAGCAATCGCCGGCCGACCTGAAGCTGGTTTCATGGCAGCCTCAAAGAAGGCAGTTTTAGGGCCATTGGTGGGGGCGGTGGACCAGGGCACCAGTTCGACGCGCTTTTTGGTTTTCAATTCAAAAACAGCTGAACTACTTAGTCATCATCAAGTGGAAATAAAACAAGAGTTCCCAAGAGAAGGATGGGTGGAACAGGACCCTAAAGAAATTCTACACTCTGTCTATGAGTGTATAGAGAAAACATGTGAGAAACTTGGACAGCTCAATATTGATATTTCCAACATAAAAGCTATTGGTGTCAGCAACCAGAGGGAAACCACTGTAGTCTGGGACAAGATAACTGGAGAGCCTCTCTACAATGCTGTGGCTGCTCCAGTTTCTCCTGGCCCTTCAGTTCCAGTTGCCGTTGTTCCCTCTGGCTCTTCAGTTCCAGCTGCTGGTACTTCCTCAGTGTGGCTTGATCTAAGAACCCAGTCTACCGTTGAGAGTCTTAGTAAAAGAATTCCAGGAAATAATAACTTTGTCAAGTCCAAGACAGGCCTTCCACTTAGCACTTACTTCAGTGCAGTGAAACTTCGTTGGCTCCTTGACAATGTGAGAAAAGTTCAAAAGGCCGTTGAAGAAAAACGAGCTCTTTTTGGGACTATTGATTCATGGCTTATTTGGAGTTTGACAGGAGGAGTCAATGGAGGTGTCCACTGTACAGATGTAACAAATGCAAGTAGGACTATGCTTTTCAACATTCATTCTTTGGAATGGGATAAACAGCTCTGCGAATTTTTTGGAATTCCAATGGAAATTCTTCCAAATGTCCGGAGTTCTTCTGAGATCTATGGCCTAATGAAAATCTCTCATAGCCTGAAAGCTGGGGCCTTGGAAGGTGTGCCAATATCTGGGTGTTTAGGGGACCAGTCTGCTGCATTGGTGGGACAAATGTGCTTCCAGATTGGACAAGCCAAAAATACGTATGGAACAGGATGTTTCTTACTATGTAATACAGGCCATAAGTGTGTATTTTCTGATCATGGCCTTCTCACCACAGTGGCTTACAAACTTGGCAGAGACAAACCAGTATATTATGCTTTGGAAGGTTCTGTAGCTATAGCTGGTGCTGTTATTCGCTGGCTAAGAGACAATCTTGGAATTATAAAGACCTCAGAAGAAATTGAAAAGCTTGCTAAAGAAGTAGGTACTTCTTATGGCTGCTACTTCGTCCCAGCATTTTCGGGGTTATATGCACCTTATTGGGAGCCCAGCGCAAGAGGGATAATCTGTGGACTCACTCAGTTCACCAATAAATGCCATATTGCTTTTGCTGCATTAGAAGCTGTTTGTTTCCAAACTCGAGAGATTTTGGATGCCATGAATCGAGACTGTGGAATTCCACTCAGTCATTTGCAGGTAGATGGAGGAATGACCAGCAACAAAATTCTTATGCAGCTACAAGCAGACATTCTGTATATTCCAGTAGTGAAGCCCTCGATGCCCGAAACCACTGCACTAGGTGCTGCTATGGCTGCAGGGGCTGCAGAAGGAGTCGGCGTATGGAGTCTCGAACCCGAGGATTTGTCTGCCGTCACAATGGAGCGGTTTGAACCTCAGATTAATGCTGAGGAAAGTGAAATTCGTTATTCTACATGGAAGAAAGCTGTGATGAAGTCAATGGGTTGGGTTACAACTCAATCTCCAGAAAGTGGTGACCCTAGTATCTTCTGTAGTCTGCCCTTGGGCTTTTTTATAGTGAGTAGCATGGTAATGTTAATCGGAGCAAGGTACATCTCAGGTATTCCATAAAACTTACCAACTCATGGAGTCCCAAGATGTGAACTTTTTACATAATGAAAGAACCCAGCAATTCTGTCTCTTAATGCGATGACACTATTCATAGACTTTGATTTTATTTATAAGCCACTTGCTGCATGACCCTCCGAGTAGACCTGTGGCTTAAAATAAAGAAAATGCAGCAAAAAGAATGCTATAGAAATATTTGGTGGtttttttttgttttttttttttttttttttttttAACATCCACAGTTAAGGTTGGACCAGCTACCTTTGGGGCTGACCCCCTCCATTGCCATAACATCCTGCTGCATTGCCTCTAAGATGTAGGAAGAATTTGGATCCTCACTATTGGAATCTTCCATCAAACATATTCAAACACTATTGGACCAGGATTTGAGTCTCTGCATGACATATACTTGATTAAAAGGTTATTACTAACCTGTTACAAATGAGCAGCTCTTTGATTTTAACGGACACCCCAAAAGTCTTCTTGTCTACATAGTAGAAGACGGCAACACCTTCACTGAATGTTTGAATAGAAACTTCTACTAAATTATTAAAATAGACATTTAGTGTTCTCACAGCTTGGATATTTTTCTGAAAAGTATTTGCCAAAACTGAAATCCTTCAGATATTTTCCTTTGTCCCACTAGTTATGATGACTTTCTGTCTGGATCTTACAGGAAAGGATACTTTCTTTTTTCTTCCATCTTTCCTTTTTATATTTTTTACTTTGTCATACCTGCCTATATATTTTATACACTGAGGGTAGCCCATTTATAAATTAAGAGCACATTAAATTCAGAAGGTTCTAACAGGGCTGGTCTTAAGTGAACCACTATGTATATAAATATGTTGGAAAACAGCTGTATACATTTTTGGGCAACGGTTATGCATAATATTTACCAGGAGAATTTTTTTCTTAAAGAGCCAACATTTAAAATTTATGTTTTATGTCAATAAAAGAAAATATACTTTATTGTGACTTCAACTATATTTCTTATCCCTTACATTTTTATTTGTCTTAGCTTAAAAAAAGAAGAAACTGTGGAATACTACAGTAAATATTGTTTTCAAACACAAGCAATAATTCAAATAGTTATTTTTCTTTTGAATTAATTTTAGACATATTTGGGATCCTATTGAGGGGATAAGAGGATGTCAAAAAAAGTTAAATACCTAAGTAGAAAAAAATATAGAAATAAAGCCAATAATCTCTTTCAGTTCAAATGTTAGCAATTGTTAATAAGAAATTGCTATCTGGGATGACGGAATTATCTCTGCTTAGTATCTTATTGTAACTGAAAAAAGGTTTATCATTACAAATGCCTTCCAATGAAACCAAGAATTTCTCAAAATATTTAATGTCACATAAGAAGTTACCTAATCTAGCTTCTTAATGTCAATTTTTAAAAAATCTTAACATTACTTAGTTTTGTAGTAAACAGTGAAGAAAAGATTGCCTCCTAATTATTTTTTTCAATTAGTGCTGAATGGGAAAACATTTATATCTTACTATAAAAGGTTCTGTTTTGTTTGGAATTGATGGTAGCTTTATTTACTGTTCTGATTGTGCGGTTTCTAAATTATTGAATCTGCTAGGTTTCATTGATGCAGCCACCACTTAAGTGACATAAATATTATAGAGAGGTACTGTGAAATGATCACTTTGTGGCAGGGGTACTTTTAAACAATGTTTCTACAAAAGTAGGTTGAGTTCATTGTAAATAATTGTGAAAACCACTGTTCAAATAATTTTAAGATTACATTAATTTTTCTATAAATTGTAGATTTATAAATGTTTGAAATTGTACATATTGATATTTAATGACAAATTTACTTAAAATAAATTGACCCCTCATTCTTACTTGCACTTCTCATTTACAGACTAGAACTTAGATGAAAGTTAAATTAAGAAAGATGTTTCAGGAAATGTGAAACTTGGCTGTTAGCACTTGATAGGGCACACTCTGAAGAGTTAACCAACAGCCGAAGAAGTAATTTCTGTAATGATGAACACCTTAATCATTCTGTTAGAACAGACTACACTGTCCCATCTCAGCATTTGCAGAAAATACGTTGGTAAGGTCAGCAGCCATTATCAATAGGGCCTTGCGTGGCTAACCTTGACCACCATTCTTCTCTCAATCTGATAGGCAACACCTCAATCCTTTGTTCTCCAACTAATCAGTAAAATAAGTAATGCATCTCTGCTTCTGTAATGATATCTTAGAATTTTTAGTATGTTTCTTTTGAAATGCCCAAAGCCCAATTCTTTGGGATATCTTTTGGGTATCTGGTATCATGTGGGAGTGAAGAAGTAAAGTTTTTGGAGAAACCAACAAATGAAAGCTGTGATAGCACAGAAGCTAACGGCGTTGACAGTGGAGTAGGTAGTATTTACTCTGTAGTGTTTACAACATAGTAGATAGAAGCACAAAATTTTTTTTAACTGTAACTCTTTCATAGCTTGTTTTATCTAGTAATATTTAAACATTGATGTTTCCTTGATCCTTTGCTTTTGCAACCTAACAACTTTAATAATAAGTTCACATAATAAACAATGAGTAGAAAATTGA

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