Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HSPA8P9
Plot displaying the genomic locations of a retrocopy (in scaffold_m16_p_8) and its respective parental gene (in scaffold_m16_p_22). Each line represents a retrocopy.
Species Molossus molossus
Coordinates scaffold_m16_p_8:2781030-2781771  UCSC
Strand -
Parental Sequence HSPA8_x6
Parental seq. overlap 579 bp
Parental seq. overlap (%) 29.9%
Genomic Region Intergenic
Retrocopy Summary HSPA8P9, located on scaffold_m16_p_8:2781030-2781771, is a retrocopy of the parental gene HSPA8. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HSPA8
Full Name N/A
Also known as NULL
Coordinate scaffold_m16_p_22:3346849-3351426
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Mouse lemur Microcebus murinus HSPA8P6
Sheep Ovis aries HSPA8P7
Horse Equus caballus HSPA8P6
Dog Canis familiaris HSPA8P7
Panda Ailuropoda melanoleuca HSPA8P4
Cat Felis catus HSPA8P3
Greater mouse-eared bat Myotis myotis HSPA8P17
Greater horseshoe bat Rhinolophus ferrumequinum HSPA8P10
Egyptian rousette Rousettus aegyptiacus HSPA8P2
Sloth Choloepus didactylus HSPA8P6
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Dolphin Tursiops truncatus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HSPA8P9
ATTGATTCACTTTATGAAGGCATTGACTTCTATACATCCATTACTAGAGCCCGGTTTGAAGAGCTGTGCTCCGACCTGTTCCGGGGCACTCTGGAGCCTGTGGAGAAGGCTCTTCGGGATGCCAAGATGGATAAGGCTAAAATCCATGACATTGTTTTAGTGGGGGGCTCCACCCGCATCCCTAAGGTTCAGAGGCTATTGCAGGACTACTTTAATGGCCGTGAACTCAACAAGAGCATCAACCCCGACGAGGCGGTGGCCTATGGGGCAGCGGTGCAGGCAGCCATCCTGATGGGGGACAAGTCTGAGAACGTGCAGGACCTGCTGCTGCTGGACGTGGCTCCCCTGTCACTGGGGCTGGAGACAGCCGGGGGTGTGATGACTGCCCTGATCAAGCGCAACTCCACCATCCCCACCAAGCAGACACAGATCTTCACCACCTACTCCGACAACCAGCCAGGGGTGCTGATCCAGGTGTTCGAGGGTGAGAGGGCCATGACGAGGGACAACAACCTGCTGGGGCGCTTTGACCTGACTGGAATCCCTCCTGCACCCAGAGGAGTTCCTCAGATCGAAGTGACTTTTGATATTGATGCCAATGGTATTCTTAATGTAACAGCCATGGACAAGAGCACTGGCAAGGCCAACAAGATCACCATCACCAATGACAAGGGCCGCCTGAGCAAAGAGGACATCGAGCGCATGGTTCTGGATGCTGAGAAATATAAAGCTGAAGATGAGG
>HSPA8_x6
ATGTCTAAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTATTTCAGCACGGAAAAGTGGAAATAATTGCCAACGATCAGGGAAACCGAACCACCCCAAGTTATGTTGCCTTTACTGATACCGAACGATTGATCGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCTACCAACACAGTTTTTGACGCCAAGCGCTTGATTGGACGTAGATTTGACGATGCCGTTGTCCAATCTGATATGAAACATTGGCCCTTCATGGTGGTGAATGATGCTGGCAGGCCCAAAGTCCAAGTAGAATACAAGGGAGAGACAAAAAGTTTCTATCCCGAAGAGGTGTCATCTATGGTTTTGACAAAGATGAAGGAAATCGCAGAAGCCTACCTTGGGAAGACTGTTACCAATGCTGTTGTCACAGTACCTGCTTACTTCAATGACTCTCAGCGCCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCTGCTGCTATTGCTTATGGCTTAGACAAAAAGGTTGGAGCTGAAAGGAACGTGCTGATCTTTGACTTGGGAGGTGGCACTTTCGATGTGTCAATTCTCACAATTGAAGATGGAATCTTTGAGGTCAAATCTACAGCTGGGGACACCCACTTGGGTGGAGAAGATTTTGACAACCGAATGGTCAACCATTTCATTGCAGAGTTCAAACGCAAACATAAGAAGGACATCAGTGAGAACAAGAGGGCTGTCCGCCGTCTTCGTACTGCCTGTGAACGTGCTAAGCGTACTCTATCTTCCAGTACCCAGGCCAGTATTGAGATTGATTCGCTCTATGAAGGAATCGACTTCTATACCTCTATCACCCGTGCCAGATTTGAAGAATTGAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCCTTCGGGATGCCAAGCTTGACAAGTCCCAGATCCATGATATTGTCCTGGTGGGTGGTTCTACCCGTATCCCCAAGATTCAGAAACTCCTGCAGGACTTCTTCAATGGAAAAGAGTTGAATAAGAGCATCAATCCAGATGAGGCTGTTGCTTATGGTGCAGCGGTCCAGGCAGCCATCCTCTCTGGAGACAAATCGGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCACTCCTCTTTCCCTTGGCATTGAGACTGCTGGTGGAGTCATGACTGTCCTCATCAAGCGCAATACTACTATTCCTACCAAGCAGACGCAGACCTTCACCACCTACTCTGACAATCAGCCTGGTGTGCTCATTCAGGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCACCTCGTGGTGTTCCTCAGATTGAAGTCACTTTCGATATTGATGCTAATGGCATCCTCAATGTTTCTGCTGTGGATAAGAGTACAGGAAAAGAGAACAAGATTACCATCACTAATGACAAAGGTCGCCTGAGCAAGGAGGACATTGAGCGCATGGTCCACGAAGCTGAGGAGTACAAAGCTGAAGATGAGAAGCAGTGGAACAAAGTATCTTCCAAGAATTCACTTGAATCCTATGCATTCAACATGAAAGCAACTGTTGAAGATGAAAAGCTCAAGATCAATGATGAGGACAAACAGAAGATTCTTGACAAGTGCAATGAAATTATCAACTGGCTTGACAAGAATCAGACTGCAGAAAAGGAAGAATTTGAACATCAGCAGAAAGAATTGGAAAAAGTCTGCAACCCCATCATTACCAAGCTGTACCAGAGTGCAGGAGGCATGCCTGGAGGAATGCCCGGAGGCTTTCCCGGTGGTGGAGCCCCTCCCTCTGGTGGTGCTTCCTCTGGGCCCACTATTGAAGAGGTTGACTAA

Publications

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